| MirGeneDB ID | Spu-Mir-2007 |
|---|
| Family name |
MIR-2007 (all species) |
|---|
| Seed |
AUUUCAG |
|---|
| Species |
Purple sea urchin (Strongylocentrotus purpuratus) |
|---|
| MiRBase ID |
spu-mir-2007
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Pfl-Mir-2007
Pmi-Mir-2007
Sko-Mir-2007
|
|---|
| Node of Origin (locus) |
Ambulacraria
|
|---|
| Node of Origin (family) |
Ambulacraria
|
|---|
Genome context
(Spur_5.0) |
AAGJ06000006.1: 42333222-42333290 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GACACCUUCAGUAUCAUCAGCAUCAUGCAUUAUUUCAGGCAGUAUACUGGUAAAGGGUUUUAUUUGCACCAUUCUUACCUGUUGCUACCUGAAAUUAAUGCAAGAUGUGUGAAUAACCCAACCCCCUUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GACACCUUCAGUAUCAUCA-- A -| C U U AGGGUUUUAU
GCAUC UGCAUU AUUUCAGG AGUA AC GGUAA \
UGUAG ACGUAA UAAAGUCC UCGU UG CCAUU U
CUUCCCCCAACCCAAUAAGUG A U^ A - U CUUACCACGU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Spu-Mir-2007_5p |
| mirBase accession | MIMAT0009748 |
|---|
| Sequence |
0- UAUUUCAGGCAGUAUACUGGUAA -23
Get sequence
|
|---|
| Star sequence |
Spu-Mir-2007_3p* |
| mirBase accession | None |
|---|
| Sequence |
46- ACCUGUUGCUACCUGAAAUUAAU -69
Get sequence
|
|---|
