| MirGeneDB ID | Sko-Mir-2007 |
|---|
| Family name |
MIR-2007 (all species) |
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| Seed |
AUUUCAG |
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| Species |
Saccoglossus (Saccoglossus kowalevskii) |
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| MiRBase ID |
sko-mir-2007
|
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| Paralogues |
|
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| Orthologues |
Pfl-Mir-2007
Pmi-Mir-2007
Spu-Mir-2007
|
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| Node of Origin (locus) |
Ambulacraria
|
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| Node of Origin (family) |
Ambulacraria
|
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Genome context
(Skow_1.1) |
NW_003147285.1: 82915-82978 [+]
|
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Precursor
(pre-Mir +30nt flank) |
GGUGCUGACUGUGUGUGCGUUGCGUUGAUGUAUUUCAGGCGUUUAUACUGGUGAUGUUUGUUAUUACUUAUCUCCAGUGUACACCUGAAAUAUACCAACAAAUGCUUAGACAGCUGUGGAUCUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GGUGCUGACUGUGUGUG---| GC A C UU U UGUUUGU
CGUU GUUG UGUAUUUCAGG GU AUACUGG GA U
GUAA CAAC AUAUAAAGUCC CA UGUGACC CU A
AUCUAGGUGUCGACAGAUUC^ A- C A -- U AUUCAUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Sko-Mir-2007_5p |
| mirBase accession | MIMAT0020023 |
|---|
| Sequence |
0- UAUUUCAGGCGUUUAUACUGGUGA -24
Get sequence
|
|---|
| Star sequence |
Sko-Mir-2007_3p* |
| mirBase accession | MIMAT0020024 |
|---|
| Sequence |
42- UCCAGUGUACACCUGAAAUAUA -64
Get sequence
|
|---|
