| MirGeneDB ID | Pmi-Mir-2009 |
|---|
| Family name |
MIR-2009 (all species) |
|---|
| Seed |
GAGUUGU |
|---|
| Species |
Bat starfish (Patiria miniata) |
|---|
| MiRBase ID |
pmi-mir-2009
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Pfl-Mir-2009
Spu-Mir-2009
|
|---|
| Node of Origin (locus) |
Ambulacraria
|
|---|
| Node of Origin (family) |
Ambulacraria
|
|---|
Genome context
(Pmin1) |
JH768722.1: 167543-167600 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGCAUCACGCCAUCUUUCUCAUGAUUCUCUGGUUUUUGUGGAACAGCUCAUGCACAUUUUAUUCCAUGAGUUGUCCCACAAAGAACACAGAUCAAUGACAAAAACUUCAGGACGUUGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGCAUCACGCCAUCUUUC--| GAU C G A CACAU
UCAU UCU UG UUUUUGUGG ACAGCUCAUG U
AGUA AGA AC AGAAACACC UGUUGAGUAC U
GGUUGCAGGACUUCAAAAAC^ ACU C A C CUUAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Pmi-Mir-2009_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GGUUUUUGUGGAACAGCUCAUG -22
Get sequence
|
|---|
| Mature sequence |
Pmi-Mir-2009_3p |
| mirBase accession | MIMAT0032183 |
|---|
| Sequence |
36- UGAGUUGUCCCACAAAGAACAC -58
Get sequence
|
|---|
