| MirGeneDB ID | Spu-Mir-2009 |
|---|
| Family name |
MIR-2009 (all species) |
|---|
| Seed |
GAGUUGU |
|---|
| Species |
Purple sea urchin (Strongylocentrotus purpuratus) |
|---|
| MiRBase ID |
spu-mir-2009
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Pfl-Mir-2009
Pmi-Mir-2009
|
|---|
| Node of Origin (locus) |
Ambulacraria
|
|---|
| Node of Origin (family) |
Ambulacraria
|
|---|
Genome context
(Spur_5.0) |
AAGJ06000835.1: 1151464-1151524 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGAUUAUACUUCAAAUCCUCAGUAAUCUUUGGUUUUUGUGGAACAGCUCCUGUGAAUUAUAUAAGACCAUGAGUUGUCCCACAAAGAACACAGAUCGCUGUGAAUCAUCACUUCAAACUUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGAUUAUACUUCAAAUCCU--| UA U G A C UGAAUUA
CAG AUCU UG UUUUUGUGG ACAGCUC UG \
GUC UAGA AC AGAAACACC UGUUGAG AC U
CUUCAAACUUCACUACUAAGU^ GC C A C U CAGAAUA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Spu-Mir-2009_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GGUUUUUGUGGAACAGCUCCUG -22
Get sequence
|
|---|
| Mature sequence |
Spu-Mir-2009_3p |
| mirBase accession | MIMAT0009750 |
|---|
| Sequence |
39- UGAGUUGUCCCACAAAGAACAC -61
Get sequence
|
|---|
