| MirGeneDB ID | Pfl-Mir-2009 |
|---|
| Family name |
MIR-2009 (all species) |
|---|
| Seed |
GAGUUGU |
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| Species |
Ptychodera (Ptychodera flava) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Pmi-Mir-2009
Spu-Mir-2009
|
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| Node of Origin (locus) |
Ambulacraria
|
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| Node of Origin (family) |
Ambulacraria
|
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Genome context
(Pfl) |
LD355980.1: 422987-423047 [+]
|
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Precursor
(pre-Mir +30nt flank) |
GCAUGAUGCUUCUCUUUGGCAGUGUUUUGCGGUUUUUGUGGAACAACUCACAGAAACUUUCCAACUAUGUGAGUUGUCCCACAAAGAACACAGAAUGCUGUGGCUUACAUCUCGACAACUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCAUGAUGCUUCUCUUUG--| CGG A GAAACUU
GCAGUGUUUUG UUUUUGUGG ACAACUCACA \
UGUCGUAAGAC AGAAACACC UGUUGAGUGU U
GUCAACAGCUCUACAUUCGG^ ACA C AUCAACC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Pfl-Mir-2009_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- GGUUUUUGUGGAACAACUCACA -22
Get sequence
|
|---|
| Mature sequence |
Pfl-Mir-2009_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UGAGUUGUCCCACAAAGAACAC -61
Get sequence
|
|---|
