| MirGeneDB ID | Pmi-Mir-2011 |
|---|
| Family name |
MIR-2011 (all species) |
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| Seed |
CAAGGUG |
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| Species |
Bat starfish (Patiria miniata) |
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| MiRBase ID |
pmi-mir-2011
|
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| Paralogues |
|
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| Orthologues |
Pfl-Mir-2011
Sko-Mir-2011
Spu-Mir-2011
|
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| Node of Origin (locus) |
Ambulacraria
|
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| Node of Origin (family) |
Ambulacraria
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Genome context
(Pmin1) |
JH780600.1: 59500-59563 [+]
|
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Precursor
(pre-Mir +30nt flank) |
AUUCACCCCAGCACAUAGACUUGUGCGGUGCAGUCACUAUCACACCUUAGGUGUGUCAGUAUUUCCAGGUCACCAAGGUGUGUUAGUGAUGACACUGCGCAAAGUCCCUCACAACAGGCCCAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUUCACCCCAGCACAUA- -| CA U A UGUCAGUA
GAC UUGUGCGGUG GUCACUA CACACCUU GGUG \
CUG AACGCGUCAC UAGUGAU GUGUGGAA CCAC U
UAACCCGGACAACACUCC A^ AG U - UGGACCUU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Pmi-Mir-2011_5p* |
| mirBase accession | MIMAT0032185 |
|---|
| Sequence |
0- CAGUCACUAUCACACCUUAGGUG -23
Get sequence
|
|---|
| Mature sequence |
Pmi-Mir-2011_3p |
| mirBase accession | MIMAT0032186 |
|---|
| Sequence |
42- CCAAGGUGUGUUAGUGAUGACA -64
Get sequence
|
|---|
