MirGeneDB 2.1

MirGeneDB ID

Sko-Mir-2011

Family name MIR-2011 (all species)
Seed CAAGGUG
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-2011
Paralogues
Orthologues Pfl-Mir-2011  Pmi-Mir-2011  Spu-Mir-2011 
Node of Origin (locus) Ambulacraria
Node of Origin (family) Ambulacraria
Genome context
(Skow_1.1)
NW_003116456.1: 416867-416928 [+]
Precursor
(pre-Mir +30nt flank)
AAGCUAGGAGCAGAUGUGUUUAUUUCAAUGCGGUCACUGUCACACCUUAAGGUGUCAAAAUUAAAUUACACCAAGGUGUGUUAGUGAUGACAUUGCAAUAGAACUAAUCAACAAUCAUACUG
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Structure
        10          20        30        40        50        60 
AAGCUAGGAGCAGAUGUG--|     U     CG       U        AA    UCAAAA 
                    UUUAUU CAAUG  GUCACUG CACACCUU  GGUG      U
                    AGAUAA GUUAC  UAGUGAU GUGUGGAA  CCAC      U
GUCAUACUAACAACUAAUCA^     C     AG       U        --    AUUAAA 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Sko-Mir-2011_5p* (predicted)

mirBase accessionNone
Sequence
0- CGGUCACUGUCACACCUUAAGGUG -24
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Mature sequence

Sko-Mir-2011_3p

mirBase accessionMIMAT0009739
Sequence
40- CCAAGGUGUGUUAGUGAUGACA -62
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