| MirGeneDB ID | Sko-Mir-2011 |
|---|
| Family name |
MIR-2011 (all species) |
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| Seed |
CAAGGUG |
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| Species |
Saccoglossus (Saccoglossus kowalevskii) |
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| MiRBase ID |
sko-mir-2011
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| Paralogues |
|
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| Orthologues |
Pfl-Mir-2011
Pmi-Mir-2011
Spu-Mir-2011
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| Node of Origin (locus) |
Ambulacraria
|
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| Node of Origin (family) |
Ambulacraria
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Genome context
(Skow_1.1) |
NW_003116456.1: 416867-416928 [+]
|
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Precursor
(pre-Mir +30nt flank) |
AAGCUAGGAGCAGAUGUGUUUAUUUCAAUGCGGUCACUGUCACACCUUAAGGUGUCAAAAUUAAAUUACACCAAGGUGUGUUAGUGAUGACAUUGCAAUAGAACUAAUCAACAAUCAUACUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAGCUAGGAGCAGAUGUG--| U CG U AA UCAAAA
UUUAUU CAAUG GUCACUG CACACCUU GGUG U
AGAUAA GUUAC UAGUGAU GUGUGGAA CCAC U
GUCAUACUAACAACUAAUCA^ C AG U -- AUUAAA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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|
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| Star sequence |
Sko-Mir-2011_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CGGUCACUGUCACACCUUAAGGUG -24
Get sequence
|
|---|
| Mature sequence |
Sko-Mir-2011_3p |
| mirBase accession | MIMAT0009739 |
|---|
| Sequence |
40- CCAAGGUGUGUUAGUGAUGACA -62
Get sequence
|
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