MirGeneDB 3.0

MirGeneDB ID

Spu-Mir-2011

Family name MIR-2011 (all species)
Seed CAAGGUG
Species Purple sea urchin (Strongylocentrotus purpuratus)
MiRBase ID spu-mir-2011
Paralogues
Orthologues Pfl-Mir-2011  Pmi-Mir-2011  Sko-Mir-2011 
Node of Origin (locus) Ambulacraria
Node of Origin (family) Ambulacraria
Genome context
(Spur_5.0)
AAGJ06000016.1: 28635498-28635558 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAGACGAUCGCACCGUGCCUAGUCUCCCUGCAGUCACUACCACACCUUCGGUGGCUUUUUAUAGCUUCACCAAGGUGUGCUAGUGAUGACAGGGGGAUGGGAACAAUCAGCUGCAGACUGG
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Structure
        10           20        30        40        50        60
AAGACGAUCGCACCGUG---|   G        CA       C        C    GCUUUU 
                    CCUA UCUCCCUG  GUCACUA CACACCUU GGUG      U
                    GGGU AGGGGGAC  UAGUGAU GUGUGGAA CCAC      A
GGUCAGACGUCGACUAACAA^   -        AG       C        -    UUCGAU 
 .       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
32 Bl Eg Ga Ov Pl To To
Star sequence

Spu-Mir-2011_5p*

mirBase accessionNone
Sequence
0- CAGUCACUACCACACCUUCGGUG -23
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Mature sequence

Spu-Mir-2011_3p

mirBase accessionMIMAT0009752
Sequence
39- CCAAGGUGUGCUAGUGAUGACA -61
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