MirGeneDB ID | Spu-Mir-2011 |
Family name |
MIR-2011 (all species) |
Seed |
CAAGGUG |
Species |
Purple sea urchin (Strongylocentrotus purpuratus) |
MiRBase ID |
spu-mir-2011
|
Paralogues |
|
Orthologues |
Pfl-Mir-2011
Pmi-Mir-2011
Sko-Mir-2011
|
Node of Origin (locus) |
Ambulacraria
|
Node of Origin (family) |
Ambulacraria
|
Genome context (Spur_5.0) |
AAGJ06000016.1: 28635498-28635558 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGACGAUCGCACCGUGCCUAGUCUCCCUGCAGUCACUACCACACCUUCGGUGGCUUUUUAUAGCUUCACCAAGGUGUGCUAGUGAUGACAGGGGGAUGGGAACAAUCAGCUGCAGACUGG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAGACGAUCGCACCGUG---| G CA C C GCUUUU
CCUA UCUCCCUG GUCACUA CACACCUU GGUG U
GGGU AGGGGGAC UAGUGAU GUGUGGAA CCAC A
GGUCAGACGUCGACUAACAA^ - AG C - UUCGAU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Spu-Mir-2011_5p* |
mirBase accession | None |
Sequence |
0- CAGUCACUACCACACCUUCGGUG -23
Get sequence
|
Mature sequence |
Spu-Mir-2011_3p |
mirBase accession | MIMAT0009752 |
Sequence |
39- CCAAGGUGUGCUAGUGAUGACA -61
Get sequence
|