MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-12475-P27c

Family name MIR-12475 (all species)
Seed UGACAUC
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-12475-P1  Sha-Mir-12475-P2a  Sha-Mir-12475-P2b  Sha-Mir-12475-P3  Sha-Mir-12475-P4  Sha-Mir-12475-P5  Sha-Mir-12475-P6  Sha-Mir-12475-P7  Sha-Mir-12475-P8  Sha-Mir-12475-P9  Sha-Mir-12475-P10  Sha-Mir-12475-P11  Sha-Mir-12475-P12  Sha-Mir-12475-P13  Sha-Mir-12475-P14  Sha-Mir-12475-P15  Sha-Mir-12475-P16  Sha-Mir-12475-P17  Sha-Mir-12475-P18  Sha-Mir-12475-P19  Sha-Mir-12475-P20a  Sha-Mir-12475-P20b  Sha-Mir-12475-P20c  Sha-Mir-12475-P20d  Sha-Mir-12475-P21  Sha-Mir-12475-P22  Sha-Mir-12475-P23  Sha-Mir-12475-P24  Sha-Mir-12475-P25  Sha-Mir-12475-P26  Sha-Mir-12475-P27a1  Sha-Mir-12475-P27a2  Sha-Mir-12475-P27b  Sha-Mir-12475-P28  Sha-Mir-12475-P29  Sha-Mir-12475-P30 
Orthologues
Node of Origin (locus) S. harrisii
Node of Origin (family) Australidelphia
Genome context
(DEVIL_add)		 GL868171.1: 6266-6326 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCUGUAUUUUUGAAAUGCUGGAGGUCCACUUGACAUCCUGAAACCUCAUUGUUUGUAUGAUCCUUUGAACAAUGUGGCUCAGAAUGUUGUGGGCCUUUAGCACCUACAACAUUUUGUUCU
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Structure
        10          20        30        40        50        60 
GGCUGUAUUUUUGAAAU--|            UU     C    AA  U       UGUAUG 
                   GCUGGAGGUCCAC  GACAU CUGA  CC CAUUGUU      A
                   CGAUUUCCGGGUG  UUGUA GACU  GG GUAACAA      U
UCUUGUUUUACAACAUCCA^            --     A    C-  U       GUUUCC 
 .       110       100        90          80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-12475-P27c_5p
mirBase accessionNone
Sequence 
0- UUGACAUCCUGAAACCUCAUUGUU -24
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Star sequence

Sha-Mir-12475-P27c_3p*
mirBase accessionNone
Sequence 
40- CAAUGUGGCUCAGAAUGUUGU -61
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