Mir-12475-P16

MirGeneDB ID

Sha-Mir-12475-P16

Family name

MIR-12475 (all species)

Seed

AAACACU

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-12475-P1 Sha-Mir-12475-P2a Sha-Mir-12475-P2b Sha-Mir-12475-P3 Sha-Mir-12475-P4 Sha-Mir-12475-P5 Sha-Mir-12475-P6 Sha-Mir-12475-P7 Sha-Mir-12475-P8 Sha-Mir-12475-P9 Sha-Mir-12475-P10 Sha-Mir-12475-P11 Sha-Mir-12475-P12 Sha-Mir-12475-P13 Sha-Mir-12475-P14 Sha-Mir-12475-P15 Sha-Mir-12475-P17 Sha-Mir-12475-P18 Sha-Mir-12475-P19 Sha-Mir-12475-P20a Sha-Mir-12475-P20b Sha-Mir-12475-P20c Sha-Mir-12475-P20d Sha-Mir-12475-P21 Sha-Mir-12475-P22 Sha-Mir-12475-P23 Sha-Mir-12475-P24 Sha-Mir-12475-P25 Sha-Mir-12475-P26 Sha-Mir-12475-P27a1 Sha-Mir-12475-P27a2 Sha-Mir-12475-P27b Sha-Mir-12475-P27c Sha-Mir-12475-P28 Sha-Mir-12475-P29 Sha-Mir-12475-P30

Orthologues

Node of Origin (locus)

S. harrisii

Node of Origin (family)

Australidelphia

Genome context
(DEVIL_add)

GL867758.1: 22924-22983 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGCUGCAUUUUGAGCUGCUGAAGUCCCACUAAACACUCUGAAGCCACAUUGUUUGUAUAUUUUUUGAACAAUGUGUCUCAGAGUUUAGUGGGCCCUUAGCACCCACAUCAUCUUCCCUG

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Structure

        10          20        30        40        50        60 
GGGCUGCAUUUUGAGCU--|    AGU        AC       A C         UGUAUA 
                   GCUGA   CCCACUAA  ACUCUGA G CACAUUGUU      \
                   CGAUU   GGGUGAUU  UGAGACU C GUGUAACAA      U
GUCCCUUCUACUACACCCA^    CCC        --       - U         GUUUUU 
.       110       100        90          80         70

Deep sequencing

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-12475-P16_5p

mirBase accession

None

Sequence

0- UAAACACUCUGAAGCCACAUUGUU -24

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Star sequence

Sha-Mir-12475-P16_3p*

mirBase accession

None

Sequence

39- CAAUGUGUCUCAGAGUUUAGU -60

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