Mir-7373-o7

MirGeneDB ID

Sha-Mir-7373-o7

Family name

MIR-7373 (all species)

Seed

AGCCCUU

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-7373-o1 Sha-Mir-7373-o2 Sha-Mir-7373-o3 Sha-Mir-7373-o4 Sha-Mir-7373-o5 Sha-Mir-7373-o6 Sha-Mir-7373-o8a Sha-Mir-7373-o8b Sha-Mir-7373-o8c Sha-Mir-7373-o8d1 Sha-Mir-7373-o8d2 Sha-Mir-7373-o8e Sha-Mir-7373-o8f Sha-Mir-7373-o8g Sha-Mir-7373-o8h Sha-Mir-7373-o8i Sha-Mir-7373-o8j Sha-Mir-7373-o9a Sha-Mir-7373-o9b Sha-Mir-7373-o9c

Orthologues

Mdo-Mir-7373-P7a Mdo-Mir-7373-P7b Neu-Mir-7373

Node of Origin (locus)

S. harrisii

Node of Origin (family)

Marsupialia

Genome context
(DEVIL_add)

GL867601.1: 2089434-2089488 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUAAAUGAAGACACACUGAGAUGGCAGGGCAAGCCCUUACCCAUCUAUCUGAUAGAUACAACUCAGGUAGAGAGGAGGGGUUUGCUCCUUCAUCUCACAGCACAACAGCCUUCAC

Get precursor sequence

Structure

        10          20         30        40        50       
GUAAAUGAAGACACACU--|      C   -          A  CA         UAGA 
                   GAGAUGG AGG GCAAGCCCUU CC  UCUAUCUGA    U
                   CUCUACU UCC CGUUUGGGGA GG  AGAUGGACU    A
CACUUCCGACAACACGACA^      -   U          -  AG         CAAC 
   110       100        90         80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-7373-o7_5p

mirBase accession

None

Sequence

0- AAGCCCUUACCCAUCUAUCUGA -22

Get sequence

Co-mature sequence

Sha-Mir-7373-o7_3p

mirBase accession

None

Sequence

34- AGGUAGAGAGGAGGGGUUUGC -55

Get sequence