MirGeneDB 3.0
MirGeneDB ID

Sha-Novel-18-v2

Family name SHA-NOVEL-18 (all species)
Seed CAGUCUC
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID sha-mir-340
Paralogues Sha-Novel-18-v1 
Orthologues
Node of Origin (locus) S. harrisii
Node of Origin (family) S. harrisii
Genome context
(DEVIL_add)		 GL834730.1: 741073-741129 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Novel-18-v2)		 Novel-18-v1 GL834730.1: 741072-741130 [-] UCSC Ensembl
Novel-18-v2 GL834730.1: 741073-741129 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GACUGGAGAUCUUUAAGAUACAGGGUGUGACUAUAAAGUAAUGAGACUGGUGUUUGUGUGCAGGAUCAGUCUCAUUACUUUAUAGUCAUGCCUUGUAUAUGCUCAUCCUUCAUACUG
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Structure
        10          20        30        40        50        
GACUGGAGAUCUUUAAG--|                                 GUUUGU 
                   AUACAGGGUGUGACUAUAAAGUAAUGAGACUGGU      \
                   UAUGUUCCGUACUGAUAUUUCAUUACUCUGACUA      G
GUCAUACUUCCUACUCGUA^                                 GGACGU 
     110       100        90        80        70        60
Deep sequencing
CommentThis was previously called Mir-340. Note that the reverse complement is given in miRBase as the 5' ends of the arms are palindromic but in this orientation the 3' ends correspond to the processed miRNAs.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Novel-18-v2_5p*
mirBase accessionNone
Sequence 
0- CUAUAAAGUAAUGAGACUGGUG -22
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Mature sequence

Sha-Novel-18-v2_3p
mirBase accessionMIMAT0022775
Sequence 
35- UCAGUCUCAUUACUUUAUAGUC -57
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