MirGeneDB 3.0

MirGeneDB ID

Sha-Novel-2-P1b

Family name SHA-NOVEL-2 (all species)
Seed UUCCCAA
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Novel-2-P1a  Sha-Novel-2-P2  Sha-Novel-2-P3  Sha-Novel-2-P4  Sha-Novel-2-P5a  Sha-Novel-2-P5b 
Orthologues
Node of Origin (locus) S. harrisii
Node of Origin (family) S. harrisii
Genome context
(DEVIL_add)
Precursor
(pre-Mir +30nt flank)
AGUGCCCAGUGUUUGAAAAAGAAAAGGAAUCCUCUUAGUCCACUUUCCCAAAACUAGGCACCGA
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Structure
          10        20        30   
A--|    C   G    AA    AAAA   AUCC 
   GUGCC AGU UUUG  AAAG    GGA    U
   CACGG UCA AAAC  UUUC    CCU    C
AGC^    A   -    CC    A---   GAUU 
   60         50           40
Deep sequencing
3' NTU No
MotifsNo
Star sequence

Sha-Novel-2-P1b_5p*

mirBase accessionNone
Sequence
0- AGUGCCCAGUGUUUGAAAAAGA -22
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Mature sequence

Sha-Novel-2-P1b_3p

mirBase accessionNone
Sequence
43- UUUCCCAAAACUAGGCACCGA -64
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