MirGeneDB ID | Sha-Novel-2-P1b |
---|---|
Family name | SHA-NOVEL-2 (all species) |
Seed | UUCCCAA |
Species | Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID | |
Paralogues | Sha-Novel-2-P1a Sha-Novel-2-P2 Sha-Novel-2-P3 Sha-Novel-2-P4 Sha-Novel-2-P5a Sha-Novel-2-P5b |
Orthologues | |
Node of Origin (locus) | S. harrisii |
Node of Origin (family) | S. harrisii |
Genome context (DEVIL_add) |
|
Precursor (pre-Mir +30nt flank) | AGUGCCCAGUGUUUGAAAAAGAAAAGGAAUCCUCUUAGUCCACUUUCCCAAAACUAGGCACCGAGet precursor sequence |
Structure | 10 20 30 A--| C G AA AAAA AUCC GUGCC AGU UUUG AAAG GGA U CACGG UCA AAAC UUUC CCU C AGC^ A - CC A--- GAUU 60 50 40 |
Deep sequencing | |
3' NTU | No |
Motifs | No |
Star sequence | Sha-Novel-2-P1b_5p* |
mirBase accession | None |
Sequence |
0- AGUGCCCAGUGUUUGAAAAAGA -22
Get sequence
|
Mature sequence | Sha-Novel-2-P1b_3p |
mirBase accession | None |
Sequence |
43- UUUCCCAAAACUAGGCACCGA -64
Get sequence
|