| MirGeneDB ID | Sha-Novel-2-P3 |
|---|
| Family name |
SHA-NOVEL-2 (all species) |
|---|
| Seed |
GUGCCCA |
|---|
| Species |
Tasmanian devil (Sarcophilus harrisii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Sha-Novel-2-P1a
Sha-Novel-2-P1b
Sha-Novel-2-P2
Sha-Novel-2-P4
Sha-Novel-2-P5a
Sha-Novel-2-P5b
|
|---|
| Orthologues |
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| Node of Origin (locus) |
S. harrisii
|
|---|
| Node of Origin (family) |
S. harrisii
|
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Genome context
(DEVIL_add) |
GL867924.1: 40191-40249 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUGGGUGACAGAACUAAUGGCACCUGAUCCUGUGCCCAGUGUGGAAAAGGAAUCCUCUCAGUAGUCCACUUUCCAUCCCUGGGUACUGAUGCCGCUGCCUCCAGCACCACCACACACCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUGGGUGACAGAACUAAU-- CCUG- CU U- A-| AUCCUC
GGCA AUC GUGCCCAG GUGGAAA GGA \
CCGU UAG CAUGGGUC UACCUUU CCU U
UCCACACACCACCACGACCU CGCCG U- CC CA^ GAUGAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Mature sequence |
Sha-Novel-2-P3_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGUGCCCAGUGUGGAAAAGGA -21
Get sequence
|
|---|
| Star sequence |
Sha-Novel-2-P3_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- CACUUUCCAUCCCUGGGUACUGA -59
Get sequence
|
|---|
