| MirGeneDB ID | Sha-Novel-2-P2 |
|---|---|
| Family name | SHA-NOVEL-2 (all species) |
| Seed | GUGCCCA |
| Species | Tasmanian devil (Sarcophilus harrisii) |
| MiRBase ID | |
| Paralogues | Sha-Novel-2-P1a Sha-Novel-2-P1b Sha-Novel-2-P3 Sha-Novel-2-P4 Sha-Novel-2-P5a Sha-Novel-2-P5b |
| Orthologues | |
| Node of Origin (locus) | S. harrisii |
| Node of Origin (family) | S. harrisii |
| Genome context (DEVIL_add) |
GL867900.1: 156722-156780 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GUGACAGAGCUAAUAAAUGGCACCUGAUCCUGUGCCCAGUGUGGAAAAGGAAUCCUCUCAGUAAUCCACUUUCCAUCUCUGGGUACUGAUGCCGCUGCCUCCAGCACCACCACACACUUGet precursor sequence |
| Structure | 10 20 30 40 50 GUGACAGAGCUAAUAAAU-- CCUG- CU U- A-| AUCCUC GGCA AUC GUGCCCAG GUGGAAA GGA \ CCGU UAG CAUGGGUC UACCUUU CCU U UUCACACACCACCACGACCU CGCCG U- UC CA^ AAUGAC 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Sha-Novel-2-P2_5p |
| mirBase accession | None |
| Sequence |
0- UGUGCCCAGUGUGGAAAAGGA -21
Get sequence
|
| Star sequence | Sha-Novel-2-P2_3p* |
| mirBase accession | None |
| Sequence |
36- CACUUUCCAUCUCUGGGUACUGA -59
Get sequence
|
