MirGeneDB ID | Sha-Novel-22-P2b-v2 |
Family name |
SHA-NOVEL-22 (all species) |
Seed |
UGAGGUU |
Species |
Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID |
|
Paralogues |
Sha-Novel-22-P1a-v1
Sha-Novel-22-P1a-v2
Sha-Novel-22-P1b-v1
Sha-Novel-22-P1b-v2
Sha-Novel-22-P2a-v1
Sha-Novel-22-P2a-v2
Sha-Novel-22-P2b-v1
Sha-Novel-22-P3
Sha-Novel-22-P4
Sha-Novel-22-P5-v1
Sha-Novel-22-P5-v2
|
Orthologues |
|
Node of Origin (locus) |
S. harrisii
|
Node of Origin (family) |
S. harrisii
|
Genome context (DEVIL_add) |
GL867904.1: 82754-82812 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUGACAGUCCCUCUGAUCCUGACUGCCUACUUGAGGUUUGAGCUACUGGCUACUUAUUUCUCUUGGUAGCCAGCAGCCAAACCUUUAGUAGUAAGUCAGACUAGCAACAAAGAGGACAC
Get precursor sequence
|
Structure | 10 20 30 40 50
UUGACAGUCCCUCUGAUC--| GC U A A UAUU
CUGACU CUACU GAGGUUUG GCU CUGGCUACU U
GACUGA GAUGA UUCCAAAC CGA GACCGAUGG C
CACAGGAGAAACAACGAUCA^ AU U - C UUCU
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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Mature sequence |
Sha-Novel-22-P2b-v2_5p |
mirBase accession | None |
Sequence |
0- UUGAGGUUUGAGCUACUGGCUACU -24
Get sequence
|
Star sequence |
Sha-Novel-22-P2b-v2_3p* |
mirBase accession | None |
Sequence |
36- UAGCCAGCAGCCAAACCUUUAGU -59
Get sequence
|