| MirGeneDB ID | Sha-Novel-22-P3 |
|---|
| Family name |
SHA-NOVEL-22 (all species) |
|---|
| Seed |
GAGGUUU |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
|
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| Paralogues |
Sha-Novel-22-P1a-v1
Sha-Novel-22-P1a-v2
Sha-Novel-22-P1b-v1
Sha-Novel-22-P1b-v2
Sha-Novel-22-P2a-v1
Sha-Novel-22-P2a-v2
Sha-Novel-22-P2b-v1
Sha-Novel-22-P2b-v2
Sha-Novel-22-P4
Sha-Novel-22-P5-v1
Sha-Novel-22-P5-v2
|
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| Orthologues |
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| Node of Origin (locus) |
S. harrisii
|
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| Node of Origin (family) |
S. harrisii
|
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Genome context
(DEVIL_add) |
GL867904.1: 83832-83888 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AAACAGUCCCUCUUUUCCUGACUGCCUACUUGAGGUUUGAGCUCGUGGCUACUCAUUUCUCUUGGUAGCCAGCAGCCAAACCUUUAGUAGUAAGUCAGAAUGGCAACAAAGAGGACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAACAGUCCCUCUUUUC--| GC U A CG CAUU
CUGACU CUACU GAGGUUUG GCU UGGCUACU U
GACUGA GAUGA UUCCAAAC CGA ACCGAUGG C
ACAGGAGAAACAACGGUAA^ AU U - CG UUCU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Mature sequence |
Sha-Novel-22-P3_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGAGGUUUGAGCUCGUGGCUACU -23
Get sequence
|
|---|
| Star sequence |
Sha-Novel-22-P3_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- UAGCCAGCAGCCAAACCUUUAG -57
Get sequence
|
|---|
