MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-133-P16

Family name MIR-133 (all species)
Seed UGGUCCC
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-133a
Paralogues Sme-Mir-133-P17 
Orthologues Aae-Mir-133  Aga-Mir-133  Asu-Mir-133  Bge-Mir-133  Cbr-Mir-133  Cel-Mir-133  Cin-Mir-133  Cte-Mir-133  Dan-Mir-133  Dgr-Mir-133  Dlo-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dpu-Mir-133  Dsi-Mir-133  Dya-Mir-133  Eba-Mir-133  Efe-Mir-133  Egr-Mir-133  Esc-Mir-133  Gpa-Mir-133  Gsp-Mir-133  Hme-Mir-133  Hru-Mir-133  Isc-Mir-133  Lan-Mir-133  Lgi-Mir-133  Lhy-Mir-133  Llo-Mir-133  Mgi-Mir-133  Mom-Mir-133  Obi-Mir-133  Ofu-Mir-133  Ovu-Mir-133  Pau-Mir-133  Pca-Mir-133  Pcr-Mir-133  Pdu-Mir-133  Pve-Mir-133  Rph-Mir-133  Sma-Mir-133  Snu-Mir-133  Spu-Mir-133  Tca-Mir-133  Tur-Mir-133  War-Mir-133  Xbo-Mir-133 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000064_dd_Smes_g4_64: 2266095-2266162 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAAAUAAUUAAUCGCAGUAUAUUUAUAGCAGCUGUUGACGAAGUAUCAAAAUAGUUAAAUGAUGAUAUAAAUUAUUUGGUCCCCGUCAACCAGCUGUUAUAAUGUACAUUAACAUCCUAAUUUGAAU
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Structure
        10           20        30         40        50        60   
AGAAAUAAUUAAUCGCA---|      U          -      AAGU      AUAGUUAAAUG 
                    GUAUAUU AUAGCAGCUG UUGACG    AUCAAA           A
                    CAUGUAA UAUUGUCGAC AACUGC    UGGUUU           U
UAAGUUUAAUCCUACAAUUA^      -          C      CCC-      AUUAAAUAUAG 
      120       110        100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Star sequence

Sme-Mir-133-P16_5p*
mirBase accessionMIMAT0012155
Sequence 
0- AGCUGUUGACGAAGUAUCAAAA -22
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Mature sequence

Sme-Mir-133-P16_3p
mirBase accessionMIMAT0011258
Sequence 
46- UUGGUCCCCGUCAACCAGCUGU -68
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