MirGeneDB 3.0

MirGeneDB ID

Spu-Mir-2002

Family name MIR-2002 (all species)
Seed GAAUACA
Species Purple sea urchin (Strongylocentrotus purpuratus)
MiRBase ID spu-mir-2002
Paralogues
Orthologues Pmi-Mir-2002 
Node of Origin (locus) Eleutherozoa
Node of Origin (family) Eleutherozoa
Genome context
(Spur_5.0)
AAGJ06000001.1: 43632827-43632891 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-2002)
Mir-34 AAGJ06000001.1: 43627763-43627823 [-] Ensembl
Mir-2002 AAGJ06000001.1: 43632827-43632891 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AGGUAUGGACCUGUUAUUCAUCAGACUGAUAAGACCAACAGGUGUUAUUCUCAUGUGUGAUGUACAGAUCUGUGAAUACAUCUGCUGGUUUUUAUUAGGCUCGAUGAUAGAUCAACUCUUGCACU
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Structure
        10         20         30         40        50        60  
AGGUAUGGACCUGUUAU-     -  A     -|      A       U    U  UGUGUGAU 
                  UCAUC AG CUGAU AAGACCA CAGGUGU AUUC CA        \
                  AGUAG UC GAUUA UUUUGGU GUCUACA UAAG GU        G
UCACGUUCUCAACUAGAU     C  G     U^      C       -    U  CUAGACAU 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
32 Bl Eg Ga Ov Pl To To
Star sequence

Spu-Mir-2002_5p*

mirBase accessionMIMAT0019165
Sequence
0- AAGACCAACAGGUGUUAUUCUCA -23
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Mature sequence

Spu-Mir-2002_3p

mirBase accessionMIMAT0009743
Sequence
42- UGAAUACAUCUGCUGGUUUUUAU -65
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