MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-3821-v1

Family name MIR-3821 (all species)
Seed UUCUAGU
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-3821
Paralogues Tca-Mir-3821-v2 
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)		 LGX: 6586315-6586372 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-3821-v1)		 Mir-3809 LGX: 6585862-6585919 [+] Ensembl
Mir-3825 LGX: 6586009-6586065 [+] Ensembl
Mir-3821-v2 LGX: 6586315-6586372 [+] Ensembl
Mir-3821-v1 LGX: 6586315-6586372 [+] Ensembl
Mir-11635 LGX: 6586742-6586801 [+] Ensembl
Mir-3820 LGX: 6587625-6587682 [+] Ensembl
Mir-3814 LGX: 6587955-6588013 [+] Ensembl
Mir-11636 LGX: 6593233-6593288 [+] Ensembl
Mir-3822 LGX: 6594368-6594426 [+] Ensembl
Mir-3816-v1 LGX: 6594971-6595029 [+] Ensembl
Mir-3816-v2 LGX: 6594971-6595029 [+] Ensembl
Mir-3811-P6 LGX: 6595867-6595926 [+] Ensembl
Mir-3811-P1 LGX: 6596442-6596505 [+] Ensembl
Mir-3811-P2b LGX: 6597098-6597161 [+] Ensembl
Mir-3811-P2a LGX: 6597433-6597496 [+] Ensembl
Mir-3811-P3 LGX: 6597762-6597824 [+] Ensembl
Mir-3811-P4 LGX: 6598335-6598398 [+] Ensembl
Mir-3811-P5 LGX: 6598547-6598608 [+] Ensembl
Mir-3824 LGX: 6600300-6600356 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUGGAAAAAUAAAUGUAUGUGUUGCAAUUUAGCAUCCUCCUCUUAGGAAUUUUAUAUUUGAGAAAUUUCUAGUGAGUGAGGAUGUUAAUUUUUGGCACAAAUCAUCGUCAGACUUUUU
Get precursor sequence
Structure
        10          20        30         40         50       
AUGGAAAAAUAAAUGUA--       C  U           -   -|        UUAUA 
                   UGUGUUG AA UUAGCAUCCUC CUC UUAGGAAUU     U
                   ACACGGU UU AAUUGUAGGAG GAG GAUCUUUAA     U
UUUUUCAGACUGCUACUAA       U  U           U   U^        AGAGU 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-3821-v1_5p*
mirBase accessionMIMAT0018668
Sequence 
0- AGCAUCCUCCUCUUAGGAAUU -21
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Mature sequence

Tca-Mir-3821-v1_3p
mirBase accessionMIMAT0018669
Sequence 
35- UUUCUAGUGAGUGAGGAUGUUAA -58
Get sequence