| MirGeneDB ID | Tur-Mir-5738 |
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| Family name |
MIR-5738 (all species) |
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| Seed |
AUGUAAU |
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| Species |
Two-spotted spider mite (Tetranychus urticae) |
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| MiRBase ID |
tur-mir-5738
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
T. urticae
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| Node of Origin (family) |
T. urticae
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Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces) |
HE587302.1: 4314298-4314360 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCAUAAAAUGAGCCACCCCAUGGUGCUCCCAAUGUAAUGAUAGCAAAAACUUUGUAAUUGAUUAUAAUCAAGUUUUCUCUAUCAUUACCUUGGGAGCACCAUGGGGUGACUCAUUUUAUGCUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GCAUAAAAUGAGCCACC--| U CA UUGUAAUUG
CCAUGGUGCUCCCAA GUAAUGAUAG AAAACU \
GGUACCACGAGGGUU CAUUACUAUC UUUUGA A
UUCGUAUUUUACUCAGUGG^ C UC ACUAAUAUU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
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| Mature sequence |
Tur-Mir-5738_5p |
| mirBase accession | MIMAT0023110 |
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| Sequence |
0- AAUGUAAUGAUAGCAAAAACU -21
Get sequence
|
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| Star sequence |
Tur-Mir-5738_3p* |
| mirBase accession | MIMAT0023111 |
|---|
| Sequence |
42- UUUUCUCUAUCAUUACCUUGG -63
Get sequence
|
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