| MirGeneDB ID | Tur-Novel-2 |
|---|
| Family name |
TUR-NOVEL-2 (all species) |
|---|
| Seed |
UCACAAC |
|---|
| Species |
Two-spotted spider mite (Tetranychus urticae) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
T. urticae
|
|---|
| Node of Origin (family) |
T. urticae
|
|---|
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces) |
HE587314.1: 2074896-2074957 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GAAUAUUUUCUUUAAAGUGGCCAUAUUUUCAGUGAGUCUGUCACUGUGAGAUUUGAAAUUGAAAUGCAUUCUCACAACGUCAGACUCUCUGCAAAUUGGAUCGCAUAUCUUACAAUACAAUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GAAUAUUUUCUUUAAAGU-- -| U U U UCAC UUUGAAAU
GG CCA AUUU CAG GAGUCUG UGUGAGA U
CU GGU UAAA GUC CUCAGAC ACACUCU G
UUAACAUAACAUUCUAUACG A^ - C U UGCA UACGUAAA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Tur-Novel-2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGUGAGUCUGUCACUGUGAGAU -22
Get sequence
|
|---|
| Mature sequence |
Tur-Novel-2_3p |
| mirBase accession | None |
|---|
| Sequence |
40- CUCACAACGUCAGACUCUCUGC -62
Get sequence
|
|---|
