MirGeneDB 3.0

MirGeneDB ID

Tur-Novel-3

Family name TUR-NOVEL-3 (all species)
Seed AUAAAAU
Species Two-spotted spider mite (Tetranychus urticae)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) T. urticae
Node of Origin (family) T. urticae
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)
HE587303.1: 2777364-2777427 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUACAUUUGUAAUUUAAAAGUACGAGAUGAUAUAAAAUGGACUCCGGAUUUUUGUGCAUUUCUACAGAUAUAAAUCCGGGGCUCAUUUUAAAUCAGCUUGUAUUAUUUGGCAUACUUCCUCUAC
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Structure
        10          20        30        40        50        60 
GUACAUUUGUAAUUUAAA--|       A    A       GA          UUGUGCAUU 
                    AGUACGAG UGAU UAAAAUG  CUCCGGAUUU         U
                    UUAUGUUC ACUA AUUUUAC  GGGGCCUAAA         C
CAUCUCCUUCAUACGGUUUA^       G    A       UC          UAUAGACAU 
  120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsNo
Tissue expression
 +
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Mature sequence

Tur-Novel-3_5p

mirBase accessionNone
Sequence
0- UAUAAAAUGGACUCCGGAUUU -21
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Star sequence

Tur-Novel-3_3p*

mirBase accessionNone
Sequence
43- AUCCGGGGCUCAUUUUAAAUC -64
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