MirGeneDB ID | Tur-Novel-3 |
Family name |
TUR-NOVEL-3 (all species) |
Seed |
AUAAAAU |
Species |
Two-spotted spider mite (Tetranychus urticae) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
T. urticae
|
Node of Origin (family) |
T. urticae
|
Genome context (GCA_000239435.1_ASM23943v1_genomic_TUR_traces) |
HE587303.1: 2777364-2777427 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
GUACAUUUGUAAUUUAAAAGUACGAGAUGAUAUAAAAUGGACUCCGGAUUUUUGUGCAUUUCUACAGAUAUAAAUCCGGGGCUCAUUUUAAAUCAGCUUGUAUUAUUUGGCAUACUUCCUCUAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUACAUUUGUAAUUUAAA--| A A GA UUGUGCAUU
AGUACGAG UGAU UAAAAUG CUCCGGAUUU U
UUAUGUUC ACUA AUUUUAC GGGGCCUAAA C
CAUCUCCUUCAUACGGUUUA^ G A UC UAUAGACAU
120 110 100 90 80 70 |
Deep sequencing |
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|
Comment | There is a second Dicer cut +1 on the 3p arm. |
3' NTU |
No
|
Motifs | No |
Tissue expression
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Mature sequence |
Tur-Novel-3_5p |
mirBase accession | None |
Sequence |
0- UAUAAAAUGGACUCCGGAUUU -21
Get sequence
|
Star sequence |
Tur-Novel-3_3p* |
mirBase accession | None |
Sequence |
43- AUCCGGGGCUCAUUUUAAAUC -64
Get sequence
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