MirGeneDB 3.0

MirGeneDB ID

Tur-Novel-4

Family name TUR-NOVEL-4 (all species)
Seed AGGAAAG
Species Two-spotted spider mite (Tetranychus urticae)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) T. urticae
Node of Origin (family) T. urticae
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)
HE587327.1: 533052-533118 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CACAAUUAAGUUAUACCGUUAAAGAUUUUGAAGGAAAGAAUGGGACUAUUGACUUUGAUUAUAAUCAAAUUAAGUCAGUCUUCCCUCUUUCCUUAAAAAAUCAUAACUUUUUGUACACCAACUUAAU
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Structure
        10           20        30         40        50        60   
CACAAUUAAGUUAUACC---|   AA      G-         AU    CU       UUGAUUAU 
                    GUUA  GAUUUU  AAGGAAAGA  GGGA  AUUGACU        A
                    CAAU  CUAAAA  UUCCUUUCU  CCCU  UGACUGA        A
UAAUUCAACCACAUGUUUUU^   A-      AA         --    UC       AUUAAACU 
     120       110        100        90          80        70
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsNo
Tissue expression
 +
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Mature sequence

Tur-Novel-4_5p

mirBase accessionNone
Sequence
0- AAGGAAAGAAUGGGACUAUUGACU -24
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Star sequence

Tur-Novel-4_3p*

mirBase accessionNone
Sequence
44- UCAGUCUUCCCUCUUUCCUUAAA -67
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