| MirGeneDB ID | Tur-Novel-5 |
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| Family name |
TUR-NOVEL-5 (all species) |
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| Seed |
ACCGGGA |
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| Species |
Two-spotted spider mite (Tetranychus urticae) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
T. urticae
|
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| Node of Origin (family) |
T. urticae
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Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces) |
HE587309.1: 1096052-1096111 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAACGUGAAUCAAUAUAUCUUCAAACAAAUAGGUGCACCCGUCUUCGGAGUUUGUUUUAUCUACAUCAACACCGGGAUGAUGGCACCUCUUGGUUUGAAUAAAAUUCACCAGUUCUACCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CAACGUGAAUCAAUAUAUC--| A U ACC U A UGUUUUA
UUCAAAC AA AGGUGC CGUCU CGG GUU \
AAGUUUG UU UCCACG GUAGG GCC CAA U
ACCAUCUUGACCACUUAAAAU^ G C GUA - A CUACAUC
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut +1 on the 3p arm. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
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| Star sequence |
Tur-Novel-5_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGUGCACCCGUCUUCGGAGUU -22
Get sequence
|
|---|
| Mature sequence |
Tur-Novel-5_3p |
| mirBase accession | None |
|---|
| Sequence |
39- CACCGGGAUGAUGGCACCUCU -60
Get sequence
|
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