Mir-126-P2d

MirGeneDB ID

Xla-Mir-126-P2d

Family name

MIR-126 (all species)

Seed

AUUAUUA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-126-2

Paralogues

Xla-Mir-126-P2c

Orthologues

Aca-Mir-126-P2-v1 Aca-Mir-126-P2-v2 Aca-Mir-126-P2-v3 Ami-Mir-126-P2-v1 Ami-Mir-126-P2-v2 Ami-Mir-126-P2-v3 Bta-Mir-126-P2-v1 Bta-Mir-126-P2-v2 Bta-Mir-126-P2-v3 Cfa-Mir-126-P2-v1 Cfa-Mir-126-P2-v2 Cfa-Mir-126-P2-v3 Cja-Mir-126-P2-v1 Cja-Mir-126-P2-v2 Cja-Mir-126-P2-v3 Cli-Mir-126-P2-v1 Cli-Mir-126-P2-v2 Cli-Mir-126-P2-v3 Cmi-Mir-126-P2-v1 Cmi-Mir-126-P2-v2 Cmi-Mir-126-P2-v3 Cpi-Mir-126-P2-v1 Cpi-Mir-126-P2-v2 Cpi-Mir-126-P2-v3 Cpo-Mir-126-P2-v1 Cpo-Mir-126-P2-v2 Cpo-Mir-126-P2-v3 Dno-Mir-126-P2-v1 Dno-Mir-126-P2-v2 Dno-Mir-126-P2-v3 Eca-Mir-126-P2-v1 Eca-Mir-126-P2-v2 Eca-Mir-126-P2-v3 Ete-Mir-126-P2-v1 Ete-Mir-126-P2-v2 Ete-Mir-126-P2-v3 Gga-Mir-126-P2-v1 Gga-Mir-126-P2-v2 Gga-Mir-126-P2-v3 Gja-Mir-126-P2-v1 Gja-Mir-126-P2-v2 Gja-Mir-126-P2-v3 Hsa-Mir-126-P2-v1 Hsa-Mir-126-P2-v2 Hsa-Mir-126-P2-v3 Laf-Mir-126-P2-v1 Laf-Mir-126-P2-v2 Laf-Mir-126-P2-v3 Lch-Mir-126-P2 Loc-Mir-126-P2-v1 Loc-Mir-126-P2-v2 Loc-Mir-126-P2-v3 Mdo-Mir-126-P2-v1 Mdo-Mir-126-P2-v2 Mdo-Mir-126-P2-v3 Mml-Mir-126-P2-v1 Mml-Mir-126-P2-v2 Mml-Mir-126-P2-v3 Mmr-Mir-126-P2-v1 Mmr-Mir-126-P2-v2 Mmr-Mir-126-P2-v3 Mmu-Mir-126-P2-v1 Mmu-Mir-126-P2-v2 Mmu-Mir-126-P2-v3 Mun-Mir-126-P2-v1 Mun-Mir-126-P2-v2 Mun-Mir-126-P2-v3 Neu-Mir-126-P2-v1 Neu-Mir-126-P2-v2 Neu-Mir-126-P2-v3 Oan-Mir-126-P2-v1 Oan-Mir-126-P2-v2 Oan-Mir-126-P2-v3 Ocu-Mir-126-P2-v1 Ocu-Mir-126-P2-v2 Ocu-Mir-126-P2-v3 Pab-Mir-126-P2-v1 Pab-Mir-126-P2-v2 Pab-Mir-126-P2-v3 Pbv-Mir-126-P2-v1 Pbv-Mir-126-P2-v2 Pbv-Mir-126-P2-v3 Rno-Mir-126-P2-v1 Rno-Mir-126-P2-v2 Rno-Mir-126-P2-v3 Sha-Mir-126-P2-v1 Sha-Mir-126-P2-v2 Sha-Mir-126-P2-v3 Spt-Mir-126-P2 Sto-Mir-126-P2-v1 Sto-Mir-126-P2-v2 Sto-Mir-126-P2-v3 Tgu-Mir-126-P2-v1 Tgu-Mir-126-P2-v2 Tgu-Mir-126-P2-v3 Xtr-Mir-126-P2-v1 Xtr-Mir-126-P2-v2 Xtr-Mir-126-P2-v3

Node of Origin (locus)

X. laevis

Node of Origin (family)

Olfactores

Genome context
(GCF_001663975.1_XLA_v2)

NC_030739.1: 29297303-29297361 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGACGGCCGCACUGAAGGUUGGUGGCUGUGCAUUAUUACUUUUGGUACGCGCUGUGUCACAUCAAACUCGUACCGUGAGUAAUAAUGCGCGGCUGCCAAUAAUGCCGACGAGGAUGUGC

Get precursor sequence

Structure

        10          20        30        40        50         
AGACGGCCGCACUGAAG--|    UG                 U       CGCUGUGUC 
                   GUUGG  GCUGUGCAUUAUUACUU UGGUACG         \
                   UAACC  CGGCGCGUAAUAAUGAG GCCAUGC         A
CGUGUAGGAGCAGCCGUAA^    GU                 U       UCAAACUAC 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Mature sequence

Xla-Mir-126-P2d_5p

mirBase accession

MIMAT0046435

Sequence

0- CAUUAUUACUUUUGGUACGCG -21

Get sequence

Star sequence

Xla-Mir-126-P2d_3p*

mirBase accession

MIMAT0046437

Sequence

38- CGUACCGUGAGUAAUAAUGCG -59

Get sequence