Mir-126-P2-v3

MirGeneDB ID

Xtr-Mir-126-P2-v3

Family name

MIR-126 (all species)

Seed

UCGUACC

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-126

Paralogues

Xtr-Mir-126-P2-v1 Xtr-Mir-126-P2-v2

Orthologues

Aca-Mir-126-P2-v1 Aca-Mir-126-P2-v2 Aca-Mir-126-P2-v3 Ami-Mir-126-P2-v1 Ami-Mir-126-P2-v2 Ami-Mir-126-P2-v3 Bta-Mir-126-P2-v1 Bta-Mir-126-P2-v2 Bta-Mir-126-P2-v3 Cfa-Mir-126-P2-v1 Cfa-Mir-126-P2-v2 Cfa-Mir-126-P2-v3 Cja-Mir-126-P2-v1 Cja-Mir-126-P2-v2 Cja-Mir-126-P2-v3 Cli-Mir-126-P2-v1 Cli-Mir-126-P2-v2 Cli-Mir-126-P2-v3 Cmi-Mir-126-P2-v1 Cmi-Mir-126-P2-v2 Cmi-Mir-126-P2-v3 Cpi-Mir-126-P2-v1 Cpi-Mir-126-P2-v2 Cpi-Mir-126-P2-v3 Cpo-Mir-126-P2-v1 Cpo-Mir-126-P2-v2 Cpo-Mir-126-P2-v3 Dno-Mir-126-P2-v1 Dno-Mir-126-P2-v2 Dno-Mir-126-P2-v3 Dre-Mir-126-P2a-v1 Dre-Mir-126-P2a-v2 Dre-Mir-126-P2a-v3 Dre-Mir-126-P2b-v1 Dre-Mir-126-P2b-v2 Dre-Mir-126-P2b-v3 Eca-Mir-126-P2-v1 Eca-Mir-126-P2-v2 Eca-Mir-126-P2-v3 Ete-Mir-126-P2-v1 Ete-Mir-126-P2-v2 Ete-Mir-126-P2-v3 Gga-Mir-126-P2-v1 Gga-Mir-126-P2-v2 Gga-Mir-126-P2-v3 Gja-Mir-126-P2-v1 Gja-Mir-126-P2-v2 Gja-Mir-126-P2-v3 Gmo-Mir-126-P2b-v1 Gmo-Mir-126-P2b-v2 Gmo-Mir-126-P2b-v3 Hsa-Mir-126-P2-v1 Hsa-Mir-126-P2-v2 Hsa-Mir-126-P2-v3 Laf-Mir-126-P2-v1 Laf-Mir-126-P2-v2 Laf-Mir-126-P2-v3 Lch-Mir-126-P2 Loc-Mir-126-P2-v1 Loc-Mir-126-P2-v2 Loc-Mir-126-P2-v3 Mal-Mir-126-P2b-v1 Mal-Mir-126-P2b-v2 Mal-Mir-126-P2b-v3 Mdo-Mir-126-P2-v1 Mdo-Mir-126-P2-v2 Mdo-Mir-126-P2-v3 Mml-Mir-126-P2-v1 Mml-Mir-126-P2-v2 Mml-Mir-126-P2-v3 Mmr-Mir-126-P2-v1 Mmr-Mir-126-P2-v2 Mmr-Mir-126-P2-v3 Mmu-Mir-126-P2-v1 Mmu-Mir-126-P2-v2 Mmu-Mir-126-P2-v3 Mun-Mir-126-P2-v1 Mun-Mir-126-P2-v2 Mun-Mir-126-P2-v3 Neu-Mir-126-P2-v1 Neu-Mir-126-P2-v2 Neu-Mir-126-P2-v3 Oan-Mir-126-P2-v1 Oan-Mir-126-P2-v2 Oan-Mir-126-P2-v3 Ocu-Mir-126-P2-v1 Ocu-Mir-126-P2-v2 Ocu-Mir-126-P2-v3 Pab-Mir-126-P2-v1 Pab-Mir-126-P2-v2 Pab-Mir-126-P2-v3 Pbv-Mir-126-P2-v1 Pbv-Mir-126-P2-v2 Pbv-Mir-126-P2-v3 Rno-Mir-126-P2-v1 Rno-Mir-126-P2-v2 Rno-Mir-126-P2-v3 Sha-Mir-126-P2-v1 Sha-Mir-126-P2-v2 Sha-Mir-126-P2-v3 Spt-Mir-126-P2 Sto-Mir-126-P2-v1 Sto-Mir-126-P2-v2 Sto-Mir-126-P2-v3 Tgu-Mir-126-P2-v1 Tgu-Mir-126-P2-v2 Tgu-Mir-126-P2-v3 Tni-Mir-126-P2b-v1 Tni-Mir-126-P2b-v2 Tni-Mir-126-P2b-v3 Xla-Mir-126-P2c Xla-Mir-126-P2d

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Olfactores

Genome context
(xenTro9_add)

chrUn_NW_016683465v1: 92204-92262 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-126-P2-v3)

Mir-126-P2-v1 chrUn_NW_016683465v1: 92204-92262 [+] UCSC Ensembl
Mir-126-P2-v2 chrUn_NW_016683465v1: 92204-92262 [+] UCSC Ensembl
Mir-126-P2-v3 chrUn_NW_016683465v1: 92204-92262 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGACCGCCGCGCAGAAGGUUGGUGGCUGUGCAUUAUUACUUUUGGUACGCGCUGUGUCACAUCAAACUCGUACCGUGAGUAAUAAUGCGCAGCUGCCAAUAAUGCCGACAAGGAUGCUC

Get precursor sequence

Structure

        10          20        30        40        50         
AGACCGCCGCGCAGAAG--|    UG                 U       CGCUGUGUC 
                   GUUGG  GCUGUGCAUUAUUACUU UGGUACG         \
                   UAACC  CGACGCGUAAUAAUGAG GCCAUGC         A
CUCGUAGGAACAGCCGUAA^    GU                 U       UCAAACUAC 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

An	Br	Em	Em	He	Ve

Star sequence

Xtr-Mir-126-P2-v3_5p*

mirBase accession

MIMAT0003587

Sequence

0- CAUUAUUACUUUUGGUACGCGCU -23

Get sequence

Proposed targets

TargetScanVert: xtr-miR-126-5p

Mature sequence

Xtr-Mir-126-P2-v3_3p

mirBase accession

MIMAT0003588

Sequence

36- CUCGUACCGUGAGUAAUAAUGCG -59

Get sequence

Proposed targets

TargetScanVert: xtr-miR-126-3p