Mir-126-P2b-v1

MirGeneDB ID

Tni-Mir-126-P2b-v1

Family name

MIR-126 (all species)

Seed

CGUACCG

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-126

Paralogues

Tni-Mir-126-P2b-v2 Tni-Mir-126-P2b-v3

Orthologues

Aca-Mir-126-P2-v1 Aca-Mir-126-P2-v2 Aca-Mir-126-P2-v3 Ami-Mir-126-P2-v1 Ami-Mir-126-P2-v2 Ami-Mir-126-P2-v3 Bta-Mir-126-P2-v1 Bta-Mir-126-P2-v2 Bta-Mir-126-P2-v3 Cfa-Mir-126-P2-v1 Cfa-Mir-126-P2-v2 Cfa-Mir-126-P2-v3 Cja-Mir-126-P2-v1 Cja-Mir-126-P2-v2 Cja-Mir-126-P2-v3 Cli-Mir-126-P2-v1 Cli-Mir-126-P2-v2 Cli-Mir-126-P2-v3 Cmi-Mir-126-P2-v1 Cmi-Mir-126-P2-v2 Cmi-Mir-126-P2-v3 Cpi-Mir-126-P2-v1 Cpi-Mir-126-P2-v2 Cpi-Mir-126-P2-v3 Cpo-Mir-126-P2-v1 Cpo-Mir-126-P2-v2 Cpo-Mir-126-P2-v3 Dno-Mir-126-P2-v1 Dno-Mir-126-P2-v2 Dno-Mir-126-P2-v3 Dre-Mir-126-P2b-v1 Dre-Mir-126-P2b-v2 Dre-Mir-126-P2b-v3 Eca-Mir-126-P2-v1 Eca-Mir-126-P2-v2 Eca-Mir-126-P2-v3 Ete-Mir-126-P2-v1 Ete-Mir-126-P2-v2 Ete-Mir-126-P2-v3 Gga-Mir-126-P2-v1 Gga-Mir-126-P2-v2 Gga-Mir-126-P2-v3 Gja-Mir-126-P2-v1 Gja-Mir-126-P2-v2 Gja-Mir-126-P2-v3 Gmo-Mir-126-P2b-v1 Gmo-Mir-126-P2b-v2 Gmo-Mir-126-P2b-v3 Hsa-Mir-126-P2-v1 Hsa-Mir-126-P2-v2 Hsa-Mir-126-P2-v3 Laf-Mir-126-P2-v1 Laf-Mir-126-P2-v2 Laf-Mir-126-P2-v3 Lch-Mir-126-P2 Loc-Mir-126-P2-v1 Loc-Mir-126-P2-v2 Loc-Mir-126-P2-v3 Mal-Mir-126-P2b-v1 Mal-Mir-126-P2b-v2 Mal-Mir-126-P2b-v3 Mdo-Mir-126-P2-v1 Mdo-Mir-126-P2-v2 Mdo-Mir-126-P2-v3 Mml-Mir-126-P2-v1 Mml-Mir-126-P2-v2 Mml-Mir-126-P2-v3 Mmr-Mir-126-P2-v1 Mmr-Mir-126-P2-v2 Mmr-Mir-126-P2-v3 Mmu-Mir-126-P2-v1 Mmu-Mir-126-P2-v2 Mmu-Mir-126-P2-v3 Mun-Mir-126-P2-v1 Mun-Mir-126-P2-v2 Mun-Mir-126-P2-v3 Neu-Mir-126-P2-v1 Neu-Mir-126-P2-v2 Neu-Mir-126-P2-v3 Oan-Mir-126-P2-v1 Oan-Mir-126-P2-v2 Oan-Mir-126-P2-v3 Ocu-Mir-126-P2-v1 Ocu-Mir-126-P2-v2 Ocu-Mir-126-P2-v3 Pab-Mir-126-P2-v1 Pab-Mir-126-P2-v2 Pab-Mir-126-P2-v3 Pbv-Mir-126-P2-v1 Pbv-Mir-126-P2-v2 Pbv-Mir-126-P2-v3 Rno-Mir-126-P2-v1 Rno-Mir-126-P2-v2 Rno-Mir-126-P2-v3 Sha-Mir-126-P2-v1 Sha-Mir-126-P2-v2 Sha-Mir-126-P2-v3 Spt-Mir-126-P2 Sto-Mir-126-P2-v1 Sto-Mir-126-P2-v2 Sto-Mir-126-P2-v3 Tgu-Mir-126-P2-v1 Tgu-Mir-126-P2-v2 Tgu-Mir-126-P2-v3 Xtr-Mir-126-P2-v1 Xtr-Mir-126-P2-v2 Xtr-Mir-126-P2-v3

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Olfactores

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

4: 5708444-5708502 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-126-P2b-v1)

Mir-126-P2b-v1 4: 5708444-5708502 [-] UCSC Ensembl
Mir-126-P2b-v2 4: 5708444-5708502 [-] UCSC Ensembl
Mir-126-P2b-v3 4: 5708444-5708502 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAAGAGAAGAACCUAACCAGCUUCGCGGCCCAUUAUUACUUUUGGUACGCGCUAUGCCACUCUCAACUCGUACCGUGAGUAAUAAUGCACUGCGACUGGUGCCGACUCCAGACAGACGU

Get precursor sequence

Structure

        10            20        30        40        50         
GAAGAGAAGAACCUAAC----|  CU      CC           U       CGCUAUGCC 
                     CAG  UCGCGG  CAUUAUUACUU UGGUACG         \
                     GUC  AGCGUC  GUAAUAAUGAG GCCAUGC         A
UGCAGACAGACCUCAGCCGUG^  --      AC           U       UCAACUCUC 
       110       100          90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-126-P2b-v1_5p*

mirBase accession

None

Sequence

0- CAUUAUUACUUUUGGUACGCGC -22

Get sequence

Mature sequence

Tni-Mir-126-P2b-v1_3p

mirBase accession

MIMAT0002958

Sequence

37- UCGUACCGUGAGUAAUAAUGCA -59

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