Mir-126-P2-v1

MirGeneDB ID

Gga-Mir-126-P2-v1

Family name

MIR-126 (all species)

Seed

CGUACCG

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-126

Paralogues

Gga-Mir-126-P2-v2 Gga-Mir-126-P2-v3

Orthologues

Aca-Mir-126-P2-v1 Aca-Mir-126-P2-v2 Aca-Mir-126-P2-v3 Ami-Mir-126-P2-v1 Ami-Mir-126-P2-v2 Ami-Mir-126-P2-v3 Bta-Mir-126-P2-v1 Bta-Mir-126-P2-v2 Bta-Mir-126-P2-v3 Cfa-Mir-126-P2-v1 Cfa-Mir-126-P2-v2 Cfa-Mir-126-P2-v3 Cja-Mir-126-P2-v1 Cja-Mir-126-P2-v2 Cja-Mir-126-P2-v3 Cli-Mir-126-P2-v1 Cli-Mir-126-P2-v2 Cli-Mir-126-P2-v3 Cmi-Mir-126-P2-v1 Cmi-Mir-126-P2-v2 Cmi-Mir-126-P2-v3 Cpi-Mir-126-P2-v1 Cpi-Mir-126-P2-v2 Cpi-Mir-126-P2-v3 Cpo-Mir-126-P2-v1 Cpo-Mir-126-P2-v2 Cpo-Mir-126-P2-v3 Dno-Mir-126-P2-v1 Dno-Mir-126-P2-v2 Dno-Mir-126-P2-v3 Dre-Mir-126-P2a-v1 Dre-Mir-126-P2a-v2 Dre-Mir-126-P2a-v3 Dre-Mir-126-P2b-v1 Dre-Mir-126-P2b-v2 Dre-Mir-126-P2b-v3 Eca-Mir-126-P2-v1 Eca-Mir-126-P2-v2 Eca-Mir-126-P2-v3 Ete-Mir-126-P2-v1 Ete-Mir-126-P2-v2 Ete-Mir-126-P2-v3 Gja-Mir-126-P2-v1 Gja-Mir-126-P2-v2 Gja-Mir-126-P2-v3 Gmo-Mir-126-P2b-v1 Gmo-Mir-126-P2b-v2 Gmo-Mir-126-P2b-v3 Hsa-Mir-126-P2-v1 Hsa-Mir-126-P2-v2 Hsa-Mir-126-P2-v3 Laf-Mir-126-P2-v1 Laf-Mir-126-P2-v2 Laf-Mir-126-P2-v3 Lch-Mir-126-P2 Loc-Mir-126-P2-v1 Loc-Mir-126-P2-v2 Loc-Mir-126-P2-v3 Mal-Mir-126-P2b-v1 Mal-Mir-126-P2b-v2 Mal-Mir-126-P2b-v3 Mdo-Mir-126-P2-v1 Mdo-Mir-126-P2-v2 Mdo-Mir-126-P2-v3 Mml-Mir-126-P2-v1 Mml-Mir-126-P2-v2 Mml-Mir-126-P2-v3 Mmr-Mir-126-P2-v1 Mmr-Mir-126-P2-v2 Mmr-Mir-126-P2-v3 Mmu-Mir-126-P2-v1 Mmu-Mir-126-P2-v2 Mmu-Mir-126-P2-v3 Mun-Mir-126-P2-v1 Mun-Mir-126-P2-v2 Mun-Mir-126-P2-v3 Neu-Mir-126-P2-v1 Neu-Mir-126-P2-v2 Neu-Mir-126-P2-v3 Oan-Mir-126-P2-v1 Oan-Mir-126-P2-v2 Oan-Mir-126-P2-v3 Ocu-Mir-126-P2-v1 Ocu-Mir-126-P2-v2 Ocu-Mir-126-P2-v3 Pab-Mir-126-P2-v1 Pab-Mir-126-P2-v2 Pab-Mir-126-P2-v3 Pbv-Mir-126-P2-v1 Pbv-Mir-126-P2-v2 Pbv-Mir-126-P2-v3 Rno-Mir-126-P2-v1 Rno-Mir-126-P2-v2 Rno-Mir-126-P2-v3 Sha-Mir-126-P2-v1 Sha-Mir-126-P2-v2 Sha-Mir-126-P2-v3 Spt-Mir-126-P2 Sto-Mir-126-P2-v1 Sto-Mir-126-P2-v2 Sto-Mir-126-P2-v3 Tgu-Mir-126-P2-v1 Tgu-Mir-126-P2-v2 Tgu-Mir-126-P2-v3 Tni-Mir-126-P2b-v1 Tni-Mir-126-P2b-v2 Tni-Mir-126-P2b-v3 Xla-Mir-126-P2c Xla-Mir-126-P2d Xtr-Mir-126-P2-v1 Xtr-Mir-126-P2-v2 Xtr-Mir-126-P2-v3

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Olfactores

Genome context
(Gallus_gallus.GRCg6a)

17: 8047172-8047230 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-126-P2-v1)

Mir-126-P2-v1 17: 8047172-8047230 [-] UCSC Ensembl
Mir-126-P2-v2 17: 8047172-8047230 [-] UCSC Ensembl
Mir-126-P2-v3 17: 8047172-8047230 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAGGAGCAUCAGGAGCUGCUGGUGACGGCCCAUUAUUACUUUUGGUACGCGCUGUGACACUUCAAACUCGUACCGUGAGUAAUAAUGCGCUGUGGUCAGCACUGGCAUCACGUGGGCAA

Get precursor sequence

Structure

        10          20        30        40        50         
AAGGAGCAUCAGGAGCU--|    UG     C           U       CGCUGUGAC 
                   GCUGG  ACGGC CAUUAUUACUU UGGUACG         \
                   CGACU  UGUCG GUAAUAAUGAG GCCAUGC         A
AACGGGUGCACUACGGUCA^    GG     C           U       UCAAACUUC 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-126-P2-v1_5p*

mirBase accession

MIMAT0003723

Sequence

0- CAUUAUUACUUUUGGUACGCGC -22

Get sequence

Proposed targets

TargetScanVert: gga-miR-126-5p
miRDB: MIMAT0003723

Mature sequence

Gga-Mir-126-P2-v1_3p

mirBase accession

MIMAT0001169

Sequence

37- UCGUACCGUGAGUAAUAAUGCG -59

Get sequence

Proposed targets

TargetScanVert: gga-miR-126-3p
miRDB: MIMAT0001169