MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-126-P2a-v3

Family name MIR-126 (all species)
Seed UCGUACC
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-126a
Paralogues Dre-Mir-126-P2a-v1  Dre-Mir-126-P2a-v2  Dre-Mir-126-P2b-v1  Dre-Mir-126-P2b-v2  Dre-Mir-126-P2b-v3 
Orthologues Aca-Mir-126-P2-v1  Aca-Mir-126-P2-v2  Aca-Mir-126-P2-v3  Ami-Mir-126-P2-v1  Ami-Mir-126-P2-v2  Ami-Mir-126-P2-v3  Bta-Mir-126-P2-v1  Bta-Mir-126-P2-v2  Bta-Mir-126-P2-v3  Cfa-Mir-126-P2-v1  Cfa-Mir-126-P2-v2  Cfa-Mir-126-P2-v3  Cli-Mir-126-P2-v1  Cli-Mir-126-P2-v2  Cli-Mir-126-P2-v3  Cmi-Mir-126-P2-v1  Cmi-Mir-126-P2-v2  Cmi-Mir-126-P2-v3  Cpi-Mir-126-P2-v1  Cpi-Mir-126-P2-v2  Cpi-Mir-126-P2-v3  Cpo-Mir-126-P2-v1  Cpo-Mir-126-P2-v2  Cpo-Mir-126-P2-v3  Dno-Mir-126-P2-v1  Dno-Mir-126-P2-v2  Dno-Mir-126-P2-v3  Ete-Mir-126-P2-v1  Ete-Mir-126-P2-v2  Ete-Mir-126-P2-v3  Gga-Mir-126-P2-v1  Gga-Mir-126-P2-v2  Gga-Mir-126-P2-v3  Gja-Mir-126-P2-v1  Gja-Mir-126-P2-v2  Gja-Mir-126-P2-v3  Hsa-Mir-126-P2-v1  Hsa-Mir-126-P2-v2  Hsa-Mir-126-P2-v3  Lch-Mir-126-P2  Loc-Mir-126-P2-v1  Loc-Mir-126-P2-v2  Loc-Mir-126-P2-v3  Mdo-Mir-126-P2-v1  Mdo-Mir-126-P2-v2  Mdo-Mir-126-P2-v3  Mml-Mir-126-P2-v1  Mml-Mir-126-P2-v2  Mml-Mir-126-P2-v3  Mmu-Mir-126-P2-v1  Mmu-Mir-126-P2-v2  Mmu-Mir-126-P2-v3  Mun-Mir-126-P2-v1  Mun-Mir-126-P2-v2  Mun-Mir-126-P2-v3  Oan-Mir-126-P2-v1  Oan-Mir-126-P2-v2  Oan-Mir-126-P2-v3  Ocu-Mir-126-P2-v1  Ocu-Mir-126-P2-v2  Ocu-Mir-126-P2-v3  Pbv-Mir-126-P2-v1  Pbv-Mir-126-P2-v2  Pbv-Mir-126-P2-v3  Rno-Mir-126-P2-v1  Rno-Mir-126-P2-v2  Rno-Mir-126-P2-v3  Sha-Mir-126-P2-v1  Sha-Mir-126-P2-v2  Sha-Mir-126-P2-v3  Spt-Mir-126-P2  Sto-Mir-126-P2-v1  Sto-Mir-126-P2-v2  Sto-Mir-126-P2-v3  Tgu-Mir-126-P2-v1  Tgu-Mir-126-P2-v2  Tgu-Mir-126-P2-v3  Xtr-Mir-126-P2-v1  Xtr-Mir-126-P2-v2  Xtr-Mir-126-P2-v3 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Olfactores
Genome context
(danRer11)
chr8: 11548435-11548494 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-126-P2a-v3)
Mir-126-P2a-v1 chr8: 11548435-11548494 [-] UCSC Ensembl
Mir-126-P2a-v2 chr8: 11548435-11548494 [-] UCSC Ensembl
Mir-126-P2a-v3 chr8: 11548435-11548494 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAAGGAGCCAUUUUAACUGCUUCACAGUCCAUUAUUACUUUUGGUACGCGCUAGGCCAGACUCAAACUCGUACCGUGAGUAAUAAUGCACUGUGGCAGUGGGUUUAUCUGCGUGGACAA
Get precursor sequence
Structure
        10         20         30        40        50         
GAAAGGAGCCAUUUUAA- UG  -|      C           U       CGCUAGGCC 
                  C  CU UCACAGU CAUUAUUACUU UGGUACG         A
                  G  GA GGUGUCA GUAAUAAUGAG GCCAUGC         G
AACAGGUGCGUCUAUUUG GU  C^      C           U       UCAAACUCA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-126-P2a-v3_5p*

mirBase accessionMIMAT0003157
Sequence
0- CAUUAUUACUUUUGGUACGCGCU -23
Get sequence
Mature sequence

Dre-Mir-126-P2a-v3_3p

mirBase accessionMIMAT0001823
Sequence
37- CUCGUACCGUGAGUAAUAAUGCA -60
Get sequence
Proposed targets TargetScanFish: dre-miR-126a