Mir-126-P2a-v1

MirGeneDB ID

Dre-Mir-126-P2a-v1

Family name

MIR-126 (all species)

Seed

CGUACCG

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-126a

Paralogues

Dre-Mir-126-P2a-v2 Dre-Mir-126-P2a-v3 Dre-Mir-126-P2b-v1 Dre-Mir-126-P2b-v2 Dre-Mir-126-P2b-v3

Orthologues

Aca-Mir-126-P2-v1 Aca-Mir-126-P2-v2 Aca-Mir-126-P2-v3 Ami-Mir-126-P2-v1 Ami-Mir-126-P2-v2 Ami-Mir-126-P2-v3 Bta-Mir-126-P2-v1 Bta-Mir-126-P2-v2 Bta-Mir-126-P2-v3 Cfa-Mir-126-P2-v1 Cfa-Mir-126-P2-v2 Cfa-Mir-126-P2-v3 Cja-Mir-126-P2-v1 Cja-Mir-126-P2-v2 Cja-Mir-126-P2-v3 Cli-Mir-126-P2-v1 Cli-Mir-126-P2-v2 Cli-Mir-126-P2-v3 Cmi-Mir-126-P2-v1 Cmi-Mir-126-P2-v2 Cmi-Mir-126-P2-v3 Cpi-Mir-126-P2-v1 Cpi-Mir-126-P2-v2 Cpi-Mir-126-P2-v3 Cpo-Mir-126-P2-v1 Cpo-Mir-126-P2-v2 Cpo-Mir-126-P2-v3 Dno-Mir-126-P2-v1 Dno-Mir-126-P2-v2 Dno-Mir-126-P2-v3 Eca-Mir-126-P2-v1 Eca-Mir-126-P2-v2 Eca-Mir-126-P2-v3 Ete-Mir-126-P2-v1 Ete-Mir-126-P2-v2 Ete-Mir-126-P2-v3 Gga-Mir-126-P2-v1 Gga-Mir-126-P2-v2 Gga-Mir-126-P2-v3 Gja-Mir-126-P2-v1 Gja-Mir-126-P2-v2 Gja-Mir-126-P2-v3 Hsa-Mir-126-P2-v1 Hsa-Mir-126-P2-v2 Hsa-Mir-126-P2-v3 Laf-Mir-126-P2-v1 Laf-Mir-126-P2-v2 Laf-Mir-126-P2-v3 Lch-Mir-126-P2 Loc-Mir-126-P2-v1 Loc-Mir-126-P2-v2 Loc-Mir-126-P2-v3 Mdo-Mir-126-P2-v1 Mdo-Mir-126-P2-v2 Mdo-Mir-126-P2-v3 Mml-Mir-126-P2-v1 Mml-Mir-126-P2-v2 Mml-Mir-126-P2-v3 Mmr-Mir-126-P2-v1 Mmr-Mir-126-P2-v2 Mmr-Mir-126-P2-v3 Mmu-Mir-126-P2-v1 Mmu-Mir-126-P2-v2 Mmu-Mir-126-P2-v3 Mun-Mir-126-P2-v1 Mun-Mir-126-P2-v2 Mun-Mir-126-P2-v3 Neu-Mir-126-P2-v1 Neu-Mir-126-P2-v2 Neu-Mir-126-P2-v3 Oan-Mir-126-P2-v1 Oan-Mir-126-P2-v2 Oan-Mir-126-P2-v3 Ocu-Mir-126-P2-v1 Ocu-Mir-126-P2-v2 Ocu-Mir-126-P2-v3 Pab-Mir-126-P2-v1 Pab-Mir-126-P2-v2 Pab-Mir-126-P2-v3 Pbv-Mir-126-P2-v1 Pbv-Mir-126-P2-v2 Pbv-Mir-126-P2-v3 Rno-Mir-126-P2-v1 Rno-Mir-126-P2-v2 Rno-Mir-126-P2-v3 Sha-Mir-126-P2-v1 Sha-Mir-126-P2-v2 Sha-Mir-126-P2-v3 Spt-Mir-126-P2 Sto-Mir-126-P2-v1 Sto-Mir-126-P2-v2 Sto-Mir-126-P2-v3 Tgu-Mir-126-P2-v1 Tgu-Mir-126-P2-v2 Tgu-Mir-126-P2-v3 Xtr-Mir-126-P2-v1 Xtr-Mir-126-P2-v2 Xtr-Mir-126-P2-v3

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Olfactores

Genome context
(danRer11)

chr8: 11548435-11548494 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-126-P2a-v1)

Mir-126-P2a-v1 chr8: 11548435-11548494 [-] UCSC Ensembl
Mir-126-P2a-v2 chr8: 11548435-11548494 [-] UCSC Ensembl
Mir-126-P2a-v3 chr8: 11548435-11548494 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAAAGGAGCCAUUUUAACUGCUUCACAGUCCAUUAUUACUUUUGGUACGCGCUAGGCCAGACUCAAACUCGUACCGUGAGUAAUAAUGCACUGUGGCAGUGGGUUUAUCUGCGUGGACAA

Get precursor sequence

Structure

        10         20         30        40        50         
GAAAGGAGCCAUUUUAA- UG  -|      C           U       CGCUAGGCC 
                  C  CU UCACAGU CAUUAUUACUU UGGUACG         A
                  G  GA GGUGUCA GUAAUAAUGAG GCCAUGC         G
AACAGGUGCGUCUAUUUG GU  C^      C           U       UCAAACUCA 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-126-P2a-v1_5p*

mirBase accession

MIMAT0003157

Sequence

0- CAUUAUUACUUUUGGUACGCGC -22

Get sequence

Mature sequence

Dre-Mir-126-P2a-v1_3p

mirBase accession

MIMAT0001823

Sequence

38- UCGUACCGUGAGUAAUAAUGCA -60

Get sequence

Proposed targets

TargetScanFish: dre-miR-126a