MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-126-P2b-v3

Family name MIR-126 (all species)
Seed UCGUACC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-126
Paralogues Tni-Mir-126-P2b-v1  Tni-Mir-126-P2b-v2 
Orthologues Aca-Mir-126-P2-v1  Aca-Mir-126-P2-v2  Aca-Mir-126-P2-v3  Ami-Mir-126-P2-v1  Ami-Mir-126-P2-v2  Ami-Mir-126-P2-v3  Bta-Mir-126-P2-v1  Bta-Mir-126-P2-v2  Bta-Mir-126-P2-v3  Cfa-Mir-126-P2-v1  Cfa-Mir-126-P2-v2  Cfa-Mir-126-P2-v3  Cja-Mir-126-P2-v1  Cja-Mir-126-P2-v2  Cja-Mir-126-P2-v3  Cli-Mir-126-P2-v1  Cli-Mir-126-P2-v2  Cli-Mir-126-P2-v3  Cmi-Mir-126-P2-v1  Cmi-Mir-126-P2-v2  Cmi-Mir-126-P2-v3  Cpi-Mir-126-P2-v1  Cpi-Mir-126-P2-v2  Cpi-Mir-126-P2-v3  Cpo-Mir-126-P2-v1  Cpo-Mir-126-P2-v2  Cpo-Mir-126-P2-v3  Dno-Mir-126-P2-v1  Dno-Mir-126-P2-v2  Dno-Mir-126-P2-v3  Dre-Mir-126-P2b-v1  Dre-Mir-126-P2b-v2  Dre-Mir-126-P2b-v3  Eca-Mir-126-P2-v1  Eca-Mir-126-P2-v2  Eca-Mir-126-P2-v3  Ete-Mir-126-P2-v1  Ete-Mir-126-P2-v2  Ete-Mir-126-P2-v3  Gga-Mir-126-P2-v1  Gga-Mir-126-P2-v2  Gga-Mir-126-P2-v3  Gja-Mir-126-P2-v1  Gja-Mir-126-P2-v2  Gja-Mir-126-P2-v3  Gmo-Mir-126-P2b-v1  Gmo-Mir-126-P2b-v2  Gmo-Mir-126-P2b-v3  Hsa-Mir-126-P2-v1  Hsa-Mir-126-P2-v2  Hsa-Mir-126-P2-v3  Laf-Mir-126-P2-v1  Laf-Mir-126-P2-v2  Laf-Mir-126-P2-v3  Lch-Mir-126-P2  Loc-Mir-126-P2-v1  Loc-Mir-126-P2-v2  Loc-Mir-126-P2-v3  Mal-Mir-126-P2b-v1  Mal-Mir-126-P2b-v2  Mal-Mir-126-P2b-v3  Mdo-Mir-126-P2-v1  Mdo-Mir-126-P2-v2  Mdo-Mir-126-P2-v3  Mml-Mir-126-P2-v1  Mml-Mir-126-P2-v2  Mml-Mir-126-P2-v3  Mmr-Mir-126-P2-v1  Mmr-Mir-126-P2-v2  Mmr-Mir-126-P2-v3  Mmu-Mir-126-P2-v1  Mmu-Mir-126-P2-v2  Mmu-Mir-126-P2-v3  Mun-Mir-126-P2-v1  Mun-Mir-126-P2-v2  Mun-Mir-126-P2-v3  Neu-Mir-126-P2-v1  Neu-Mir-126-P2-v2  Neu-Mir-126-P2-v3  Oan-Mir-126-P2-v1  Oan-Mir-126-P2-v2  Oan-Mir-126-P2-v3  Ocu-Mir-126-P2-v1  Ocu-Mir-126-P2-v2  Ocu-Mir-126-P2-v3  Pab-Mir-126-P2-v1  Pab-Mir-126-P2-v2  Pab-Mir-126-P2-v3  Pbv-Mir-126-P2-v1  Pbv-Mir-126-P2-v2  Pbv-Mir-126-P2-v3  Rno-Mir-126-P2-v1  Rno-Mir-126-P2-v2  Rno-Mir-126-P2-v3  Sha-Mir-126-P2-v1  Sha-Mir-126-P2-v2  Sha-Mir-126-P2-v3  Spt-Mir-126-P2  Sto-Mir-126-P2-v1  Sto-Mir-126-P2-v2  Sto-Mir-126-P2-v3  Tgu-Mir-126-P2-v1  Tgu-Mir-126-P2-v2  Tgu-Mir-126-P2-v3  Xtr-Mir-126-P2-v1  Xtr-Mir-126-P2-v2  Xtr-Mir-126-P2-v3 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Olfactores
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 4: 5708444-5708502 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-126-P2b-v3)		 Mir-126-P2b-v1 4: 5708444-5708502 [-] UCSC Ensembl
Mir-126-P2b-v2 4: 5708444-5708502 [-] UCSC Ensembl
Mir-126-P2b-v3 4: 5708444-5708502 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAGAGAAGAACCUAACCAGCUUCGCGGCCCAUUAUUACUUUUGGUACGCGCUAUGCCACUCUCAACUCGUACCGUGAGUAAUAAUGCACUGCGACUGGUGCCGACUCCAGACAGACGU
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Structure
        10            20        30        40        50         
GAAGAGAAGAACCUAAC----|  CU      CC           U       CGCUAUGCC 
                     CAG  UCGCGG  CAUUAUUACUU UGGUACG         \
                     GUC  AGCGUC  GUAAUAAUGAG GCCAUGC         A
UGCAGACAGACCUCAGCCGUG^  --      AC           U       UCAACUCUC 
       110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-126-P2b-v3_5p*
mirBase accessionNone
Sequence 
0- CAUUAUUACUUUUGGUACGCGCU -23
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Mature sequence

Tni-Mir-126-P2b-v3_3p
mirBase accessionMIMAT0002958
Sequence 
36- CUCGUACCGUGAGUAAUAAUGCA -59
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