| MirGeneDB ID | Xla-Mir-214-P3-v1 |
|---|
| Family name |
MIR-214 (all species) |
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| Seed |
CAGCAGG |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-214-P3-v2
Xla-Mir-214-P4-v1
Xla-Mir-214-P4-v2
|
|---|
| Orthologues |
Cja-Mir-214
Laf-Mir-214
Lch-Mir-214
Mun-Mir-214
Pab-Mir-214
Spt-Mir-214
|
|---|
| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
Gnathostomata
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030730.1: 98479391-98479453 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GGGAUUGGCUGGAAGGAGUUGUCAUGUGUCUGCCUGUCUACACUUGCUGUGCAGAACAUCCUCUCACCUGUACAGCAGGCACAGACAGGCAGUCACAUGACAACCCAGCCUGAAUGACAACCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GGGAUUGGCUGGAAGGA--| U ACA AGAACAUC
GUUGUCAUGUG CUGCCUGUCU CUUGCUGUGC \
CAACAGUACAC GACGGACAGA GGACGACAUG C
ACCAACAGUAAGUCCGACC^ U CAC UCCACUCU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Xla-Mir-214-P3-v1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGCCUGUCUACACUUGCUGUGC -22
Get sequence
|
|---|
| Mature sequence |
Xla-Mir-214-P3-v1_3p |
| mirBase accession | None |
|---|
| Sequence |
41- ACAGCAGGCACAGACAGGCAGU -63
Get sequence
|
|---|
