MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-214-P4-v2

Family name MIR-214 (all species)
Seed ACAGCAG
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-214-P3-v1  Xla-Mir-214-P3-v2  Xla-Mir-214-P4-v1 
Orthologues Cja-Mir-214  Laf-Mir-214  Lch-Mir-214  Mun-Mir-214  Pab-Mir-214  Spt-Mir-214 
Node of Origin (locus) X. laevis
Node of Origin (family) Gnathostomata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030731.1: 80446569-80446631 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-214-P4-v2)		 Mir-199-P1d-v1 NC_030731.1: 80439840-80439900 [+] UCSC Ensembl
Mir-199-P1d-v2 NC_030731.1: 80439840-80439900 [+] UCSC Ensembl
Mir-199-P1d-v3 NC_030731.1: 80439840-80439900 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGAUUGGCUGGAAGCAGUUGUCAUGUGUCUGCCUGUCUACACUUGCUGUGCAGAACAUCCUCUCACCUGUACAGCAGGCACAGACAGGCAGUCACAUGACAACCCAGCCUGAAUGACAACCA
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Structure
        10          20        30        40        50        60 
GGGAUUGGCUGGAAGCA--|          U          ACA           GAACAUC 
                   GUUGUCAUGUG CUGCCUGUCU   CUUGCUGUGCA       \
                   CAACAGUACAC GACGGACAGA   GGACGACAUGU       C
ACCAACAGUAAGUCCGACC^          U          CAC           CCACUCU 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Em
Star sequence

Xla-Mir-214-P4-v2_5p*
mirBase accessionNone
Sequence 
0- UGCCUGUCUACACUUGCUGUGCA -23
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Mature sequence

Xla-Mir-214-P4-v2_3p
mirBase accessionNone
Sequence 
40- UACAGCAGGCACAGACAGGCAGU -63
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