MirGeneDB 3.0

MirGeneDB ID

Aga-Mir-2796

Family name MIR-2796 (all species)
Seed UAGGCCG
Species African malaria mosquito (Anopheles gambiae)
MiRBase ID aga-mir-2796
Paralogues
Orthologues Aae-Mir-2796  Bge-Mir-2796  Dlo-Mir-2796  Hme-Mir-2796  Tca-Mir-2796 
Node of Origin (locus) Neoptera
Node of Origin (family) Neoptera
Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)
NC_064601.1: 22148090-22148149 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGUACGGACCAAGCGGGCGGUUCCGGGGGCAGGGGUUUCUUUCGGCCUCCAGCAGCAUUUGACCGUUGUAGGCCGGCGGAAACUACUUGCUUCCGUCGUUCCCGUUCUACAAGGAAAGGA
Get precursor sequence
Structure
        10        20          30         40        50         
UGUACGGACCAAGCGGGC  UUC--          -|      U       C    AGCAU 
                  GG     CGGGGGCAGG GGUUUCU UCGGCCU CAGC     \
                  CC     GCCUUCGUUC UCAAAGG GGCCGGA GUUG     U
AGGAAAGGAACAUCUUGC  UUGCU          A^      C       U    CCAGU 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ab Ab He He Mi Mi Ov Ov Ov
Star sequence

Aga-Mir-2796_5p* (predicted)

mirBase accessionMIMAT0041533
Sequence
0- AGGGGUUUCUUUCGGCCUCCAGCAG -25
Get sequence
Mature sequence

Aga-Mir-2796_3p

mirBase accessionMIMAT0041534
Sequence
37- GUAGGCCGGCGGAAACUACUUGC -60
Get sequence