| MirGeneDB ID | Tca-Mir-2796 |
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| Family name |
MIR-2796 (all species) |
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| Seed |
UAGGCCG |
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| Species |
Red flour beetle (Tribolium castaneum) |
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| MiRBase ID |
tca-mir-2796
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| Paralogues |
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| Orthologues |
Aae-Mir-2796
Aga-Mir-2796
Bge-Mir-2796
Dlo-Mir-2796
Hme-Mir-2796
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| Node of Origin (locus) |
Neoptera
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| Node of Origin (family) |
Neoptera
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Genome context
(Tcas5.2) |
LG2: 14711038-14711098 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAGCCGCUAUUAACGUGGUGACGCAAGAGUAGGGGUUUCUUUCGGCCUCCAGCGGAUAAUAAAGAGUUGUAGGCCGGCGGAAACUACUUGCUUUUACGUUGCAUUACCUUCGCUGCGGCUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AAGCCGCUAUUAACGUG-- UG C -| U C CGGAUA
G ACG AAGAGUAGG GGUUUCU UCGGCCU CAG A
C UGC UUUUCGUUC UCAAAGG GGCCGGA GUU U
UUCGGCGUCGCUUCCAUUA GU A A^ C U GAGAAA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| Comment | There is a second Dicer cut -1 on both arms. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ad |
Ea |
Em |
Em |
Em |
Em |
Em |
Fe |
Fe |
Fe |
Fe |
Oo |
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| Star sequence |
Tca-Mir-2796_5p* |
| mirBase accession | MIMAT0018712 |
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| Sequence |
0- AGGGGUUUCUUUCGGCCUCCAG -22
Get sequence
|
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| Mature sequence |
Tca-Mir-2796_3p |
| mirBase accession | MIMAT0018713 |
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| Sequence |
38- GUAGGCCGGCGGAAACUACUUGC -61
Get sequence
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