| MirGeneDB ID | Agr-Mir-12590 |
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| Family name |
MIR-12590 (all species) |
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| Seed |
CUGGCGG |
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| Species |
West Indian fuzzy chiton (Acanthopleura granulata ) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Eba-Mir-12590
Mom-Mir-12590
War-Mir-12590-P1a
War-Mir-12590-P1b
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| Node of Origin (locus) |
Aculifera
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| Node of Origin (family) |
Aculifera
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Genome context
(GCA_016165875.1_ASM1616587v1_Acanthopleura_granula) |
JABBOT010000003.1: 199026-199084 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGUCGAGAGAGAGAAAGGCGGUGUGCCUGCCCCUUCCUCCGCCCGUUAGAUGGCUGUAUUUAAUCCUUCUGGCGGGCGAAGAAAGAGGCCGGGAACCGAUCAAAUCCGACAUCUUCCCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AGUCGAGAGAGAGAAAGG---| GUG U C C C U GCUGUA
CGGU CC GCC CUU CU CGCCCGUUAGA G \
GCCA GG CGG GAA GA GCGGGCGGUCU C U
ACCCUUCUACAGCCUAAACUA^ AG- C A A A U CUAAUU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Agr-Mir-12590_5p* |
| mirBase accession | None |
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| Sequence |
0- CCCUUCCUCCGCCCGUUAGAUG -22
Get sequence
|
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| Mature sequence |
Agr-Mir-12590_3p |
| mirBase accession | None |
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| Sequence |
37- UCUGGCGGGCGAAGAAAGAGGC -59
Get sequence
|
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