MirGeneDB ID | Eba-Mir-12590 |
Family name |
MIR-12590 (all species) |
Seed |
CUGGCGG |
Species |
Epimenia (Solenogaster) (Epimenia babai) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Agr-Mir-12590
Mom-Mir-12590
War-Mir-12590-P1a
War-Mir-12590-P1b
|
Node of Origin (locus) |
Aculifera
|
Node of Origin (family) |
Aculifera
|
Genome context (GCA_011762755.2_ASM1176275v2_Epimenia) |
WURV02041744.1: 1780-1840 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUACAAAAAUACAGACUGACACUCGCCUACCCCUUCCUUUUCUCGCCAGGUGGCGCAUUUCGAAAUUCUUCUGGCGGGCGAAGAAAGAGGCGGGCGUUCUGUCAUGUUCACCAGAGCGAAG
Get precursor sequence
|
Structure | 10 20 30 40 50
AUACAAAAAUACAGACU- CU-| UA C C U UGGCGCAUU
GACA CGCC CC CUU CUUU CUCGCCAGG \
CUGU GCGG GG GAA GAAG GGGCGGUCU U
GAAGCGAGACCACUUGUA CUU^ GC A A C UCUUAAAGC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Eba-Mir-12590_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CCCUUCCUUUUCUCGCCAGGUGG -23
Get sequence
|
Mature sequence |
Eba-Mir-12590_3p |
mirBase accession | None |
Sequence |
39- UCUGGCGGGCGAAGAAAGAGGC -61
Get sequence
|