MirGeneDB 3.0

MirGeneDB ID

Eba-Mir-12590

Family name MIR-12590 (all species)
Seed CUGGCGG
Species Epimenia (Solenogaster) (Epimenia babai)
MiRBase ID
Paralogues
Orthologues Agr-Mir-12590  Mom-Mir-12590  War-Mir-12590-P1a  War-Mir-12590-P1b 
Node of Origin (locus) Aculifera
Node of Origin (family) Aculifera
Genome context
(GCA_011762755.2_ASM1176275v2_Epimenia)
WURV02041744.1: 1780-1840 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUACAAAAAUACAGACUGACACUCGCCUACCCCUUCCUUUUCUCGCCAGGUGGCGCAUUUCGAAAUUCUUCUGGCGGGCGAAGAAAGAGGCGGGCGUUCUGUCAUGUUCACCAGAGCGAAG
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Structure
        10         20         30        40        50          
AUACAAAAAUACAGACU-    CU-|   UA  C   C    U         UGGCGCAUU 
                  GACA   CGCC  CC CUU CUUU CUCGCCAGG         \
                  CUGU   GCGG  GG GAA GAAG GGGCGGUCU         U
GAAGCGAGACCACUUGUA    CUU^   GC  A   A    C         UCUUAAAGC 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Eba-Mir-12590_5p* (predicted)

mirBase accessionNone
Sequence
0- CCCUUCCUUUUCUCGCCAGGUGG -23
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Mature sequence

Eba-Mir-12590_3p

mirBase accessionNone
Sequence
39- UCUGGCGGGCGAAGAAAGAGGC -61
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