MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-1677-o4

Family name MIR-1677 (all species)
Seed CCAGAGC
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-1677b
Paralogues Ami-Mir-1677-o3  Ami-Mir-1677-o5 
Orthologues Cli-Mir-1677-P4  Cpi-Mir-1677-P4  Gga-Mir-1677-P4  Tgu-Mir-1677-P4 
Node of Origin (locus) A. mississippiensis
Node of Origin (family) Diapsida
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017713709.1: 4406472-4406529 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CCCUGAGCGGCAGAGCAACUAGGGGCCUGAUCCAGAGCCCGUUGAAGUCAGCGGGAGACAUUCAAGUGACUUCAGGGGGCUUUGAAUGAGGCUCUCAGUGAUCACACUGCCGUCCCUC
Get precursor sequence
Structure
        10          20        30        40        50         
CCCUGAGCGGCAGAGCA--|  AG      G  C        G         G GGGAGA 
                   ACU  GGGCCU AU CAGAGCCC UUGAAGUCA C      \
                   UGA  CUCGGA UA GUUUCGGG GACUUCAGU G      C
CUCCCUGCCGUCACACUAG^  CU      G  A        G         - AACUUA 
      110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
To
Mature sequence

Ami-Mir-1677-o4_5p
mirBase accessionMIMAT0038320
Sequence 
0- UCCAGAGCCCGUUGAAGUCAGC -22
Get sequence
Star sequence

Ami-Mir-1677-o4_3p*
mirBase accessionMIMAT0038321
Sequence 
36- UGACUUCAGGGGGCUUUGAAUG -58
Get sequence