MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-1677-o5

Family name MIR-1677 (all species)
Seed GACCCAG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-1677c
Paralogues Ami-Mir-1677-o3  Ami-Mir-1677-o4 
Orthologues Cli-Mir-1677-P5  Gga-Mir-1677-P5  Tgu-Mir-1677-P5 
Node of Origin (locus) A. mississippiensis
Node of Origin (family) Diapsida
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017714221.1: 1818128-1818190 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CAUCAAAGGUGACUCGCAGCACUGUGGGCUUGACCCAGAACCCACUGAAGUUAAGGGCAGAGUCCCGUUAGCUUCUGUGGGCUGUAGGUCAGGCUCCACGUGUUAUAAAUCACAGGAGGGACA
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Structure
        10          20         30          40        50        60 
CAUCAAAGGUGACUCGC--     U    -        --|  AA     U      AAGGGCAG 
                   AGCAC GUGG GCUUGACC  CAG  CCCAC GAAGUU        \
                   UUGUG CACC CGGACUGG  GUC  GGGUG CUUCGA        A
ACAGGGAGGACACUAAAUA     -    U        AU^  --     U      UUGCCCUG 
 120       110       100         90          80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
To
Mature sequence

Ami-Mir-1677-o5_5p
mirBase accessionMIMAT0038322
Sequence 
0- UGACCCAGAACCCACUGAAGUU -22
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Co-mature sequence

Ami-Mir-1677-o5_3p
mirBase accessionMIMAT0038323
Sequence 
40- GCUUCUGUGGGCUGUAGGUCAGG -63
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