| MirGeneDB ID | Tgu-Mir-1677-P5 |
|---|
| Family name |
MIR-1677 (all species) |
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| Seed |
UUGACUU |
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| Species |
Zebra finch (Taeniopygia guttata) |
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| MiRBase ID |
tgu-mir-1803
|
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| Paralogues |
Tgu-Mir-1677-P1
Tgu-Mir-1677-P2
Tgu-Mir-1677-P4
Tgu-Mir-1677-P6
|
|---|
| Orthologues |
Ami-Mir-1677-o5
Cli-Mir-1677-P5
Gga-Mir-1677-P5
|
|---|
| Node of Origin (locus) |
Neognathae
|
|---|
| Node of Origin (family) |
Diapsida
|
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Genome context
(TaeGut1_add) |
2: 94474915-94474969 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAUGAAGAAAAUGGACUUAGGGCAUGAUCCAGAGCCCAUUGUAGUCAAUGGGAGACUUUUUCCAUUGACUUCAUCGGGGUUUGGAUCAGGCCUUUACUACCUAAAAUGAAUAAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAUGAAGAAAAUGGACUU---| A G AU U GAGA
AGGGC UGAUCCAGA CCC UG AGUCAAUGG C
UUCCG ACUAGGUUU GGG AC UCAGUUACC U
CAAAUAAGUAAAAUCCAUCAU^ G G CU U UUUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Drosha cut -1 on both arms. |
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| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Star sequence |
Tgu-Mir-1677-P5_5p* |
| mirBase accession | MIMAT0026965 |
|---|
| Sequence |
0- AGAGCCCAUUGUAGUCAAUGG -21
Get sequence
|
|---|
| Mature sequence |
Tgu-Mir-1677-P5_3p |
| mirBase accession | MIMAT0014472 |
|---|
| Sequence |
33- AUUGACUUCAUCGGGGUUUGGA -55
Get sequence
|
|---|
