| MirGeneDB ID | Tgu-Mir-1677-P2 |
|---|
| Family name |
MIR-1677 (all species) |
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| Seed |
CUUUAAU |
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| Species |
Zebra finch (Taeniopygia guttata) |
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| MiRBase ID |
|
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| Paralogues |
Tgu-Mir-1677-P1
Tgu-Mir-1677-P4
Tgu-Mir-1677-P5
Tgu-Mir-1677-P6
|
|---|
| Orthologues |
Cli-Mir-1677-P2
Cpi-Mir-1677-P2
Gga-Mir-1677-P2
|
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| Node of Origin (locus) |
Archelosauria
|
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| Node of Origin (family) |
Diapsida
|
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Genome context
(TaeGut1_add) |
8: 13816352-13816413 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GCACUGCCUUCUGAUCUGCAGUGUGGGCCUGAUCUAAAGCCUGUUUAAUUCAGUGGACUGAUUCCCAAUGACUUUAAUGGGCUUUGGAUUACACUCUAAUUGCACUGAUGUUCCUUUUAGUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GCACUGCCUUCUGAUCU--| GU CC U U GUGGACU
GCAGU GGG UGAUCUAAAGCCUGUU AA UCA G
CGUUA CUC AUUAGGUUUCGGGUAA UU AGU A
AUGAUUUUCCUUGUAGUCA^ AU AC U C AACCCUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | UG at 5p(-14), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Tgu-Mir-1677-P2_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- GAUCUAAAGCCUGUUUAAUUCA -22
Get sequence
|
|---|
| Mature sequence |
Tgu-Mir-1677-P2_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
40- ACUUUAAUGGGCUUUGGAUUAC -62
Get sequence
|
|---|
