MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-1677-P4

Family name MIR-1677 (all species)
Seed GACUUAA
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-1784
Paralogues Tgu-Mir-1677-P1  Tgu-Mir-1677-P2  Tgu-Mir-1677-P5  Tgu-Mir-1677-P6 
Orthologues Ami-Mir-1677-o4  Cli-Mir-1677-P4  Cpi-Mir-1677-P4  Gga-Mir-1677-P4 
Node of Origin (locus) Archelosauria
Node of Origin (family) Diapsida
Genome context
(TaeGut1_add)
3: 82428447-82428504 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUACUGUGCACUGAUUUCUUGGGGCCCAAUUCUGCUCUUAUUGAAAUCAGUGAGAGUCCUGCCAUUGACUUAAAUGGGAGCAGAAUUGGGACCUAAGAGGACAUAUCCAGUUCUGGG
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Structure
        10          20        30        40        50        
ACUACUGUGCACUGAUU--|      G                  G  A     GAGAG 
                   UCUUGGG CCCAAUUCUGCUCUUAUU AA UCAGU     U
                   AGAAUCC GGGUUAAGACGAGGGUAA UU AGUUA     C
GGGUCUUGACCUAUACAGG^      A                  A  C     CCGUC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-1677-P4_5p*

mirBase accessionMIMAT0026960
Sequence
0- UUCUGCUCUUAUUGAAAUCAGU -22
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Mature sequence

Tgu-Mir-1677-P4_3p

mirBase accessionMIMAT0014457
Sequence
36- UGACUUAAAUGGGAGCAGAAUU -58
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