MirGeneDB ID | Cli-Mir-1677-P4 |
Family name |
MIR-1677 (all species) |
Seed |
GACUUAA |
Species |
Rock pigeon (Columba livia) |
MiRBase ID |
cli-mir-1784
|
Paralogues |
Cli-Mir-1677-P1
Cli-Mir-1677-P2
Cli-Mir-1677-P5
Cli-Mir-1677-P6
|
Orthologues |
Ami-Mir-1677-o4
Cpi-Mir-1677-P4
Gga-Mir-1677-P4
Tgu-Mir-1677-P4
|
Node of Origin (locus) |
Archelosauria
|
Node of Origin (family) |
Diapsida
|
Genome context (colLiv2) |
scaffold232: 10503091-10503148 [-]
|
Precursor (pre-Mir +30nt flank) |
ACUACUGUGGACCAAUUUCUUGGGGCCCAAUUCUGCUCUUAUUGAAAUCAGUGAGAGUUCUGCCAUUGACUUAAAUGGGAGCAGAAUUGGGACCUAAGAAGACCUUUGCAGUUCUGGG
Get precursor sequence
|
Structure | 10 20 30 40 50
ACUACUGUGGACCAAUU--| G G A AGAG
UCUUGGG CCCAAUUCUGCUCUUAUU AA UCAGUG U
AGAAUCC GGGUUAAGACGAGGGUAA UU AGUUAC U
GGGUCUUGACGUUUCCAGA^ A A C CGUC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Cli-Mir-1677-P4_5p* (predicted) |
mirBase accession | MIMAT0038699 |
Sequence |
0- UUCUGCUCUUAUUGAAAUCAGUG -23
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|
Mature sequence |
Cli-Mir-1677-P4_3p (predicted) |
mirBase accession | None |
Sequence |
36- UGACUUAAAUGGGAGCAGAAUU -58
Get sequence
|