MirGeneDB 3.0

MirGeneDB ID

Cli-Mir-1677-P6

Family name MIR-1677 (all species)
Seed UGACUUA
Species Rock pigeon (Columba livia)
MiRBase ID
Paralogues Cli-Mir-1677-P1  Cli-Mir-1677-P2  Cli-Mir-1677-P4  Cli-Mir-1677-P5 
Orthologues Cpi-Mir-1677-o6  Gga-Mir-1677-P6  Tgu-Mir-1677-P6 
Node of Origin (locus) Neognathae
Node of Origin (family) Diapsida
Genome context
(colLiv2)
scaffold231: 75600-75657 [+]
Precursor
(pre-Mir +30nt flank)
AAGCCUUGACUGUUAGCCUUUGGGAUGCAAACCUGCUCUCAUUUAAGUCAAUGUGAGUUUUAUCAUUGACUUAAUUGGAAGUGAGAUUGAGCCACUGGGCAUGUGAGUGGCUUUGAGU
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Structure
        10           20        30         40        50        
AAGCCUUGACUGUUAGC---| UUG  AUG   AC  -   CU  U           UGAG 
                    CU   GG   CAA  CU GCU  CA UUAAGUCAAUG    U
                    GG   CC   GUU  GA UGA  GU AAUUCAGUUAC    U
UGAGUUUCGGUGAGUGUACG^ UCA  GA-   A-  G   AG  U           UAUU 
      110       100        90          80        70        60
Deep sequencing
3' NTU No
MotifsNo
Tissue expression
 +
Li Mi Ov Pe Te To
Star sequence

Cli-Mir-1677-P6_5p* (predicted)

mirBase accessionNone
Sequence
0- ACCUGCUCUCAUUUAAGUCAAUG -23
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Mature sequence

Cli-Mir-1677-P6_3p (predicted)

mirBase accessionNone
Sequence
35- UUGACUUAAUUGGAAGUGAGAUU -58
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