MirGeneDB ID | Cli-Mir-1677-P6 |
Family name |
MIR-1677 (all species) |
Seed |
UGACUUA |
Species |
Rock pigeon (Columba livia) |
MiRBase ID |
|
Paralogues |
Cli-Mir-1677-P1
Cli-Mir-1677-P2
Cli-Mir-1677-P4
Cli-Mir-1677-P5
|
Orthologues |
Cpi-Mir-1677-o6
Gga-Mir-1677-P6
Tgu-Mir-1677-P6
|
Node of Origin (locus) |
Neognathae
|
Node of Origin (family) |
Diapsida
|
Genome context (colLiv2) |
scaffold231: 75600-75657 [+]
|
Precursor (pre-Mir +30nt flank) |
AAGCCUUGACUGUUAGCCUUUGGGAUGCAAACCUGCUCUCAUUUAAGUCAAUGUGAGUUUUAUCAUUGACUUAAUUGGAAGUGAGAUUGAGCCACUGGGCAUGUGAGUGGCUUUGAGU
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|
Structure | 10 20 30 40 50
AAGCCUUGACUGUUAGC---| UUG AUG AC - CU U UGAG
CU GG CAA CU GCU CA UUAAGUCAAUG U
GG CC GUU GA UGA GU AAUUCAGUUAC U
UGAGUUUCGGUGAGUGUACG^ UCA GA- A- G AG U UAUU
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Cli-Mir-1677-P6_5p* (predicted) |
mirBase accession | None |
Sequence |
0- ACCUGCUCUCAUUUAAGUCAAUG -23
Get sequence
|
Mature sequence |
Cli-Mir-1677-P6_3p (predicted) |
mirBase accession | None |
Sequence |
35- UUGACUUAAUUGGAAGUGAGAUU -58
Get sequence
|