MirGeneDB ID | Cli-Mir-1677-P1 |
Family name |
MIR-1677 (all species) |
Seed |
UGACUUC |
Species |
Rock pigeon (Columba livia) |
MiRBase ID |
cli-mir-1677
|
Paralogues |
Cli-Mir-1677-P2
Cli-Mir-1677-P4
Cli-Mir-1677-P5
Cli-Mir-1677-P6
|
Orthologues |
Aca-Mir-1677-o1
Cpi-Mir-1677-P1a1
Cpi-Mir-1677-P1a2
Cpi-Mir-1677-P1b
Gga-Mir-1677-P1
Tgu-Mir-1677-P1
|
Node of Origin (locus) |
Archelosauria
|
Node of Origin (family) |
Diapsida
|
Genome context (colLiv2) |
scaffold1299: 480160-480216 [+]
|
Precursor (pre-Mir +30nt flank) |
AAGAUGUUAGCUGUGUUGCUUAGGGUCUGAUCCUGCACCGCUGAAGUCAAUGGAAGUUUUGUCAUUGACUUCAAUAGGAGCAGGAUUUGAACCUUAUGCUCUAUCAGAACACACAGG
Get precursor sequence
|
Structure | 10 20 30 40 50
AAGAUGUUAGCUGUGUU- U - U A GC-| GAAG
GC UAGGG UC GAUCCUGC CC UGAAGUCAAUG U
CG AUUCC AG UUAGGACG GG ACUUCAGUUAC U
GGACACACAAGACUAUCU U A U A AUA^ UGUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Star sequence |
Cli-Mir-1677-P1_5p* |
mirBase accession | MIMAT0038691 |
Sequence |
0- UCCUGCACCGCUGAAGUCAAUG -22
Get sequence
|
Mature sequence |
Cli-Mir-1677-P1_3p |
mirBase accession | MIMAT0038692 |
Sequence |
34- UUGACUUCAAUAGGAGCAGGAUU -57
Get sequence
|