MirGeneDB ID | Gga-Mir-1677-P6 |
Family name |
MIR-1677 (all species) |
Seed |
UGACUUA |
Species |
Chicken (Gallus gallus) |
MiRBase ID |
|
Paralogues |
Gga-Mir-1677-P1
Gga-Mir-1677-P2
Gga-Mir-1677-P3
Gga-Mir-1677-P4
Gga-Mir-1677-P5
|
Orthologues |
Cli-Mir-1677-P6
Cpi-Mir-1677-o6
Tgu-Mir-1677-P6
|
Node of Origin (locus) |
Neognathae
|
Node of Origin (family) |
Diapsida
|
Genome context (Gallus_gallus.GRCg6a) |
2: 83618413-83618470 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGCCUUGAAUAUUAGCCUUUGGGAUGCAAACCUUCUCCCAUUUAAGUCAAUGUGAGUUUUAUCAUUGACUUAAUUGGAAGUGAGAUUGAGCCACUGGGCAUGUGAGUGGCUUUGUGU
Get precursor sequence
|
Structure | 10 20 30 40 50
AAGCCUUGAAUAUUAGC---| UUG AUG AC - C U UGAG
CU GG CAA CUU CU CCA UUAAGUCAAUG U
GG CC GUU GAG GA GGU AAUUCAGUUAC U
UGUGUUUCGGUGAGUGUACG^ UCA GA- A- U A U UAUU
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Ad |
Ad |
Ad |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Gg |
He |
He |
Hy |
Hy |
Ki |
Ki |
Li |
Li |
Lu |
Lu |
Ov |
Pr |
Pr |
Sc |
Sc |
Sp |
Sp |
Te |
|
|
|
Star sequence |
Gga-Mir-1677-P6_5p* (predicted) |
mirBase accession | None |
Sequence |
0- ACCUUCUCCCAUUUAAGUCAAUG -23
Get sequence
|
Mature sequence |
Gga-Mir-1677-P6_3p (predicted) |
mirBase accession | None |
Sequence |
35- UUGACUUAAUUGGAAGUGAGAUU -58
Get sequence
|