MirGeneDB 3.0

MirGeneDB ID

Gga-Mir-1677-P5

Family name MIR-1677 (all species)
Seed UUGACUU
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-1803
Paralogues Gga-Mir-1677-P1  Gga-Mir-1677-P2  Gga-Mir-1677-P3  Gga-Mir-1677-P4  Gga-Mir-1677-P6 
Orthologues Ami-Mir-1677-o5  Cli-Mir-1677-P5  Tgu-Mir-1677-P5 
Node of Origin (locus) Neognathae
Node of Origin (family) Diapsida
Genome context
(Gallus_gallus.GRCg6a)
2: 92556457-92556510 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUGAAGAGAUUGGACUUAGGGCAUGAUCCAGAGCCCAUUGUAGUCAAUGGGAGUCUUUUUCCAUUGACUUCAGCGGGGUUUGGAUCAGGCCUUUACUUCCUGAAAAGAUAGAC
Get precursor sequence
Structure
        10          20        30        40        50      
AAUGAAGAGAUUGGACUU--|    A         G   A   U         GAGU 
                    AGGGC UGAUCCAGA CCC UUG AGUCAAUGG    C
                    UUCCG ACUAGGUUU GGG GAC UCAGUUACC    U
CAGAUAGAAAAGUCCUUCAU^    G         G   C   U         UUUU 
  110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-1677-P5_5p*

mirBase accessionNone
Sequence
0- AGAGCCCAUUGUAGUCAAUGG -21
Get sequence
Mature sequence

Gga-Mir-1677-P5_3p

mirBase accessionMIMAT0007720
Sequence
33- AUUGACUUCAGCGGGGUUUGG -54
Get sequence
Proposed targets TargetScanVert: gga-miR-1803
miRDB: MIMAT0007720