MirGeneDB ID | Asp-Mir-2023 |
Family name |
MIR-2023 (all species) |
Seed |
AAGAAGU |
Species |
Deep-sea anemone (Actinernus sp.) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Adi-Mir-2023-P1-v1
Adi-Mir-2023-P1-v2
Adi-Mir-2023-P2-v1
Adi-Mir-2023-P2-v2
Nve-Mir-2023
|
Node of Origin (locus) |
Hexacorallia
|
Node of Origin (family) |
Hexacorallia
|
Genome context (GCA_030867875.1_CUHK_Acti_1.0_genomic) |
JAOWCC010001368.1: 50318500-50318553 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGACUGCCGGAUUGCGUGACAUGUCUGUUUCUGCUGCUUGUGCUUCUGUCACAUUAACUGAUGAAAGAAGUACAAGUGGUAGGGGAGGGCAUGUCCAUAACCAGGAAUUUACAG
Get precursor sequence
|
Structure | 10 20 30 40 50
UGACUGCCGGAUUGCGU--| G UU UG G CAUU
GACAUGUCU U CUGC CUUGUGCUUCU UCA A
CUGUACGGG G GAUG GAACAUGAAGA AGU A
GACAUUUAAGGACCAAUAC^ A GG GU A AGUC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Star sequence |
Asp-Mir-2023_5p* |
mirBase accession | None |
Sequence |
0- CUGCUGCUUGUGCUUCUGUCA -21
Get sequence
|
Mature sequence |
Asp-Mir-2023_3p |
mirBase accession | None |
Sequence |
33- AAAGAAGUACAAGUGGUAGGG -54
Get sequence
|