| MirGeneDB ID | Nve-Mir-2023 |
|---|
| Family name |
MIR-2023 (all species) |
|---|
| Seed |
AAGAAGU |
|---|
| Species |
Starlet sea anemone (Nematostella vectensis) |
|---|
| MiRBase ID |
nve-mir-2023
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Adi-Mir-2023-P1-v1
Adi-Mir-2023-P1-v2
Adi-Mir-2023-P2-v1
Adi-Mir-2023-P2-v2
Asp-Mir-2023
|
|---|
| Node of Origin (locus) |
Hexacorallia
|
|---|
| Node of Origin (family) |
Hexacorallia
|
|---|
Genome context
(GCF_000209225.1_ASM20922v1_NVE) |
NW_001834120.1: 142060-142110 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GACGAGAAGAGUUGCGUGACAUACCUGUGUCUGCCACCUGUAUUUCUAUCACGUCAGAUGAAAGAAGUACAAGUGGUAGGGAAGGGUGUGUCGAUUGACAAUGGCGGCUUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GACGAGAAGAGUUGCGU--| GUG C A CGU
GACAUACCU UCUGCCAC UGUAUUUCU UCA \
CUGUGUGGG GGAUGGUG ACAUGAAGA AGU C
AUUCGGCGGUAACAGUUAG^ AAG A A AGA
. 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Nve-Mir-2023_5p* |
| mirBase accession | MIMAT0009755 |
|---|
| Sequence |
0- CUGCCACCUGUAUUUCUAUCA -21
Get sequence
|
|---|
| Mature sequence |
Nve-Mir-2023_3p |
| mirBase accession | MIMAT0009756 |
|---|
| Sequence |
30- AAAGAAGUACAAGUGGUAGGG -51
Get sequence
|
|---|
